PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028053722.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 597aa MW: 67750 Da PI: 5.3416

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028053722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	324	367	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ +++ +Lr+l+P +Kl+ a+iL A++++k+Lq XP_028053722.1 324 VAERKRRKKLSERLYTLRSLVPII-----TKLDRASILGDAINFVKELQ 367 68*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MNLMQHLLER LRPIVNFRSW DYCVLWNLGD DQRFLEWMDC CCAGSENIQN GGEELLFPTS 60 SVPPCRDLMF QHPRTKPCDL LAELPSSIPL DSGIYTQTLM SNQARWLNFS NNSDSNALEE 120 TVGTRVLIPV PIGLVELFVA KQVPEDQQII DYITAQCSNI LEQQVKVHSN NMDPNFSVNV 180 NEIQSNPFLS DKNSEKDHNN PFHPATSLEN SNLPYDITVD RIQLCNSPMN FLQPFKNDSF 240 FDGSNDSFLA DKPINTFNSS GENGFQEMEG LQSKDQQQGT DKDSIKHETG RSESISDCSD 300 LNEDEDDAKY RRRTGKGPQS KNLVAERKRR KKLSERLYTL RSLVPIITKL DRASILGDAI 360 NFVKELQKQV KDLQHELEDQ SDDEGTNNNN NYGRSEILNQ NGINNVVGLK PDQLENAPSN 420 GFHMGGAAAA ASNGDVGGVA EPPKPKHESD SCDKQRQMEP QVEVAQLDVN EFFIKVFCEH 480 KHGGFVRLIE ALNSLGLEVT NVNVASFRTL VSNVFKVEKR DSEMVQVDYV RNSLLKITRN 540 PSEMWPDQNI NDNDNGNDND NGIDYHHHHD HRRHHLHSNQ ISSHHHHHHH NHLHNQP

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MNLMQHLLER LRPIVNFRSW DYCVLWNLGD DQRFLEWMDC CCAGSENIQN GGEELLFPTS  60
SVPPCRDLMF QHPRTKPCDL LAELPSSIPL DSGIYTQTLM SNQARWLNFS NNSDSNALEE  120
TVGTRVLIPV PIGLVELFVA KQVPEDQQII DYITAQCSNI LEQQVKVHSN NMDPNFSVNV  180
NEIQSNPFLS DKNSEKDHNN PFHPATSLEN SNLPYDITVD RIQLCNSPMN FLQPFKNDSF  240
FDGSNDSFLA DKPINTFNSS GENGFQEMEG LQSKDQQQGT DKDSIKHETG RSESISDCSD  300
LNEDEDDAKY RRRTGKGPQS KNLVAERKRR KKLSERLYTL RSLVPIITKL DRASILGDAI  360
NFVKELQKQV KDLQHELEDQ SDDEGTNNNN NYGRSEILNQ NGINNVVGLK PDQLENAPSN  420
GFHMGGAAAA ASNGDVGGVA EPPKPKHESD SCDKQRQMEP QVEVAQLDVN EFFIKVFCEH  480
KHGGFVRLIE ALNSLGLEVT NVNVASFRTL VSNVFKVEKR DSEMVQVDYV RNSLLKITRN  540
PSEMWPDQNI NDNDNGNDND NGIDYHHHHD HRRHHLHSNQ ISSHHHHHHH NHLHNQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	311	332	RRRTGKGPQSKNLVAERKRRKK
2	326	333	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-143	bHLH family protein