PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028053400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25590.4 Da PI: 8.0958 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.5 | 3.1e-40 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq +l+ael XP_028053400.1 18 PCGACKFLRRKCMAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHVPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQKVNLQAEL 112 7***********************9989******************************************************************* PP DUF260 95 allkee 100 ++l+++ XP_028053400.1 113 SYLQAH 118 *99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MTSNHSTTTT TTSGGGGPCG ACKFLRRKCM AGCIFAPYFD SEQGAAHFAA VHKVFGASNV 60 SKLLHHVPAH KRLDAVVTIC YEAQARLRDP VYGCVAHIFA LQQQKVNLQA ELSYLQAHLA 120 TLELPIPLPP LPPQPLLMPP TLSLEDLPST SSMPHANDLS LLFEPIVQPS WTMQHRQINP 180 RQFGDTRTPS DILSSIEDNN GSGDLQAVAQ ELIRRRRPPP VQCLEAKPLP PHSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 1e-70 | LBD family protein |