PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028052775.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

M-type_MADS

Protein Properties

Length: 205aa MW: 23503.6 Da PI: 10.1274

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028052775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.8	2.1e-16	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i n+ r +tfskRrngi+ KA+EL++L +++ a+++fs gk + + XP_028052775.1 15 KMIANENARRITFSKRRNGIFNKASELCTLFGVDMAIVLFSIGGKAFSF 63 6799*************************************99987766 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MERKQTQGRK KIEMKMIANE NARRITFSKR RNGIFNKASE LCTLFGVDMA IVLFSIGGKA 60 FSFGKTNVDS IVDRFLNQNA QPSEGVSSHA SRHDDATVHQ LNQQFHELSK RLKDEKKKEK 120 IVQNMSNKNS GLLSCRFDAY VNQLDLQQLE QLKRSMVELN KNVAQRVNEL NSKGSSKHAQ 180 EEEQVENTKI NDNDVSTIPH DWLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-28	M-type_MADS family protein