PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028052704.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 524aa MW: 57577.2 Da PI: 8.9352

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028052704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028052704.1 89 FVCEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	12.7	0.00039	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_028052704.1 165 WKCEKCSKKYAVQSDWKAHSKTC 187 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MSNISGDDGG SFSSGNTCFS QQQKQFNHLN GSNFVPSSST SNSNGSTSQQ QQEQQPPTVK 60 KRRSLPGNPD PNAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 TSTEIRKRVY VCPETTCVHH NPARALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW 180 KAHSKTCGTK EYKCDCGTIF SRRDSFITHR AFCDALAEEN NKANEGHHGH IPDLITTTTT 240 TNTAPPPMNT TSITLPEFTQ LDIKIPIKPI IPPKPVNLSA ANGSIFPSTT NSNTLFGSPR 300 PPISPSSSTL QLSSAVNSSL CSSAAAAMSA TALLQKAAQM GATASSNMNS PMMQKSFVTS 360 MAPSSFNGMP PYDHQIHRHI QTQNYHHHHE QSQSLLAGVI GGSFATQFNM GRYIGGLNNQ 420 NHGFLGNLEE NDSDHNVLQG STPESRTELF SSFMGSNGHD DMTTVDYLGI GGTRPRNFHG 480 QQNHGGVEEY EAMSTQQRMQ GLSQFQQQQM SSGQVTCEKS MWNV

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MSNISGDDGG SFSSGNTCFS QQQKQFNHLN GSNFVPSSST SNSNGSTSQQ QQEQQPPTVK  60
KRRSLPGNPD PNAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
TSTEIRKRVY VCPETTCVHH NPARALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW  180
KAHSKTCGTK EYKCDCGTIF SRRDSFITHR AFCDALAEEN NKANEGHHGH IPDLITTTTT  240
TNTAPPPMNT TSITLPEFTQ LDIKIPIKPI IPPKPVNLSA ANGSIFPSTT NSNTLFGSPR  300
PPISPSSSTL QLSSAVNSSL CSSAAAAMSA TALLQKAAQM GATASSNMNS PMMQKSFVTS  360
MAPSSFNGMP PYDHQIHRHI QTQNYHHHHE QSQSLLAGVI GGSFATQFNM GRYIGGLNNQ  420
NHGFLGNLEE NDSDHNVLQG STPESRTELF SSFMGSNGHD DMTTVDYLGI GGTRPRNFHG  480
QQNHGGVEEY EAMSTQQRMQ GLSQFQQQQM SSGQVTCEKS MWNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	5e-99	C2H2 family protein