PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028052607.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 722aa    MW: 79556.4 Da    PI: 5.9316
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028052607.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-1958113156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+ +++p+ ++r++L ++lgL+  qVk+WFqN+R+++k
  XP_028052607.1  58 KKRYHRHTQHQIQEMETFFNDCPHPDDKQRKDLGRRLGLEPLQVKFWFQNKRTQMK 113
                     688999***********************************************998 PP
2START203.77.3e-642434631206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+k a+ +ep+W  s+    e + +de+l++f+++ +      ++e++r+s+vv+m++ +lve+l+d++ qW+  +     +a tl
  XP_028052607.1 243 ELAVAAMEELIKIAQTGEPLWIPSPddstEVLSEDEYLRTFPRGIGpkplgLKSEVSRESAVVIMNHINLVEILMDVN-QWTSVFSgivsRALTL 336
                     57899********************9999999***********999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     + +s+g      galq+m+ae+q+lsplvp R+ +fvRy++q+++++w++vdvS+++  +      + R++++pSg+li++++ng+skv+wvehv
  XP_028052607.1 337 DILSTGvagnynGALQVMTAEFQVLSPLVPtRENYFVRYCKQHTDETWAVVDVSLENLHPSV----ISRCRKRPSGCLIQELPNGYSKVIWVEHV 427
                     ********************************************************998876....7**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+++++lv+sgla+gak+wvatl+rqce+
  XP_028052607.1 428 EVDDRAVHNIYKRLVNSGLAFGAKRWVATLDRQCER 463
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    
MFQPNMFDTH DLLDMTHKTP ETELDMLRDD EFESKSGTDI MEAPSGEDQD PNQRPNKKKR  60
YHRHTQHQIQ EMETFFNDCP HPDDKQRKDL GRRLGLEPLQ VKFWFQNKRT QMKSQHERHD  120
NSLLKAENEK LRAENIRYKE ALSNATCPNC GGPAAIGEMS FDEQHLRIEN ARLRDEIDRI  180
SGIAAKYVGR TGLSHPNGPP RALDLGVVNF MPQPSMVGDL YGAGDLLRSV SAPTEQDKPM  240
IIELAVAAME ELIKIAQTGE PLWIPSPDDS TEVLSEDEYL RTFPRGIGPK PLGLKSEVSR  300
ESAVVIMNHI NLVEILMDVN QWTSVFSGIV SRALTLDILS TGVAGNYNGA LQVMTAEFQV  360
LSPLVPTREN YFVRYCKQHT DETWAVVDVS LENLHPSVIS RCRKRPSGCL IQELPNGYSK  420
VIWVEHVEVD DRAVHNIYKR LVNSGLAFGA KRWVATLDRQ CERLASAMAN NIPAGDVGVI  480
TTIEGRKSMM KLAQRMVIGF CSGVGASTAH TWTTLSGSGA DDVRVMTRKS MDDPGRPHGI  540
VLSAATSFWL PVPPKRVFDF LRNENARNEW DILSNRGVVQ EMAHIANGRD PGNAVSLLRV  600
NSGNSSQSNM LILQESCTDS TGSYVIYAPV DIVAMNVVLS GGDPDYVALL PSGFAILPDG  660
PMHLGGGIPE GVSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKGAIGSE  720
NV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein