PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028052581.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 269aa MW: 28547.5 Da PI: 9.6727

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028052581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.4e-13	179	205	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+F+H+p XP_028052581.1 179 PGQPDCQYYLKTGDCKFGSSCRFHHPP 205 5789*********************97 PP
2	zf-CCCH	36.4	8.6e-12	226	250	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++C+F H+ XP_028052581.1 226 GVQPCAFYMQNGHCKFGSTCRFDHP 250 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MKRVGMIHAS QAVVRELNPQ RIPAKEFNGE QGVPQRTLQR ARSLSAYAAD SSLDGCSDAI 60 GPRCGIRCRR APYSSATAAL PPSYRTGRPP PLPGSYVPGA YGPVLLSPGV VPISGWSPYA 120 GPISPVLSPS APHSVGAGSP YGVTQLPSSA SAFMGPYPTF PSPAGPSSST RERGFPERPG 180 QPDCQYYLKT GDCKFGSSCR FHHPPDWVVS KTNCLLSPMG LPIGPGVQPC AFYMQNGHCK 240 FGSTCRFDHP IRTVRYSPSA SSISLSLRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	2e-73	C3H family protein