PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028052104.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 282aa MW: 33018.2 Da PI: 6.7211

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028052104.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.7	1.3e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKK +ELSvLCda++ +i+fss+gkl+ey++ XP_028052104.1 9 KRIENNTSRQVTFSKRRTGLLKKTHELSVLCDAQIGLIVFSSKGKLFEYCT 59 79***********************************************96 PP
2	K-box	62	2.3e-21	83	167	12	96
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + e+ +el+++++e++nLq ++ +++GedL+s +++L +LeqqLe+s++k+R++K +ll +q+++lq+ ek+l++en+++ + XP_028052104.1 83 DDREQIFNELTRIRNETHNLQLSLQRYKGEDLSSARYEDLDELEQQLESSVNKVRARKFQLLQQQLDNLQRTEKMLEKENQDMYQ 167 55678889************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MGRGKIEVKR IENNTSRQVT FSKRRTGLLK KTHELSVLCD AQIGLIVFSS KGKLFEYCTH 60 PLSMGEMIGR YLDATGIRIP EHDDREQIFN ELTRIRNETH NLQLSLQRYK GEDLSSARYE 120 DLDELEQQLE SSVNKVRARK FQLLQQQLDN LQRTEKMLEK ENQDMYQWLM SNHMKQQAEE 180 LNHHQQAMTE LSLVGQQHQQ QVLEQFPFYG EEQPSSVLQL ASVPLQLHHH HHHHPYQLQP 240 TQPNLQDSNL LQQTYGTLQN PLKDHIDICI NSCDGVEKNF TK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	1e-53	MIKC_MADS family protein