PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028051845.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 518aa    MW: 58218.1 Da    PI: 5.8458
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028051845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.33.9e-1391485181374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+ vs++dl +aq+l+a+l++l+s +g+p+qRl ay++e+L arl++s+s +y++l+++e +   s++ l+++++++ev+P++kf++
  XP_028051845.1 148 LKQVLIACAKSVSESDLLNAQRLMAELRQLVSVSGEPIQRLGAYMLEGLVARLSSSGSLIYQTLRCKEPA---SADLLSYMHILYEVCPYFKFGY 239
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++ iTg+++++s   +   l+ +g+rL+++Ae+++vpfef+  +a +  +
  XP_028051845.1 240 MSANGAIAEAMKDENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPHICITGIDDSTSAyaRGGGLNIVGQRLSRLAESFKVPFEFHG-AAMSGCE 333
                     ******************************************************998899999************************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L +++gEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfleal+yy+a+f+s++++lpr+++eri
  XP_028051845.1 334 VQLENLGIRHGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFVPRFLEALDYYTAMFESIDVTLPRKHKERI 428
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vnvvaceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+++ +  yr+ee++g+l+lgW++r Lv+ +aW+
  XP_028051845.1 429 NVEQHCLARDVVNVVACEGIERVERHELLGKWKSRFTMAGFTPYPLSSLVNATIKTLLENYCD-KYRLEERDGALYLGWMNRDLVASCAWK 518
                     *************************************************************95.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    
MSNTLYYQPK LEVEDYCYPQ FQTFDQQSRY SNSSHGSHFS IHTSGEKYCT LDSFPATGCY  60
AVYNSPSTLS FSPNGSPISQ QECHSYGSCV TDDFIEFRHK LRELETVMLG PDSDILDSYD  120
STILQEGVAS PEIDSWRQMM EAIPRRDLKQ VLIACAKSVS ESDLLNAQRL MAELRQLVSV  180
SGEPIQRLGA YMLEGLVARL SSSGSLIYQT LRCKEPASAD LLSYMHILYE VCPYFKFGYM  240
SANGAIAEAM KDENRVHIID FQIGQGSQWV TLIQAFAARP GGPPHICITG IDDSTSAYAR  300
GGGLNIVGQR LSRLAESFKV PFEFHGAAMS GCEVQLENLG IRHGEALAVN FAFMLHHMPD  360
ESVSTQNHRD RLLRLVKSLS PKVVTLVEQE SNTNTAAFVP RFLEALDYYT AMFESIDVTL  420
PRKHKERINV EQHCLARDVV NVVACEGIER VERHELLGKW KSRFTMAGFT PYPLSSLVNA  480
TIKTLLENYC DKYRLEERDG ALYLGWMNRD LVASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein