PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028051811.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 29231.1 Da    PI: 7.5286
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028051811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_028051811.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box91.12e-30761742100
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++ + ++l+++ ++s+++e++kLk+++e Lq  qR+llGedL++L++keL++Le+qLe+ l++iRs+K++ +l+q+ +lq kek   e n+aL++
  XP_028051811.1  76 HTPEVNHLAKEIEQSSYREYSKLKDKYEALQCYQRQLLGEDLGPLNIKELEHLEHQLETTLRQIRSTKTQSMLDQLYDLQTKEKLWLESNRALET 170
                     5566777899999********************************************************************************** PP

           K-box  97 klee 100
                     kl+e
  XP_028051811.1 171 KLDE 174
                     *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SNMPKTLERY QKCSYHTPEV NHLAKEIEQS SYREYSKLKD KYEALQCYQR QLLGEDLGPL  120
NIKELEHLEH QLETTLRQIR STKTQSMLDQ LYDLQTKEKL WLESNRALET KLDEIYREHH  180
IRSSWAGSEQ CSIFSQQQQQ HPQSQVFFQP LECNSNLQIG YNPEVSNQIN AAANHDDPNM  240
NSFIPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-93MIKC_MADS family protein