PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028051627.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-PHD

Protein Properties

Length: 607aa MW: 68379.6 Da PI: 10.4059

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028051627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.2	7.6e-10	388	432	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L +F++n ps++ + L+++lg++ ++V WF+N R+ XP_028051627.1 388 PNAVEKLRIAFAENELPSKAVKDNLSQQLGIESEKVNKWFKNARY 432 67889999***********************************97 PP
2	PHD	33.3	1.1e-11	237	292	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l +e++p + w+C+ C++k XP_028051627.1 237 ICAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLLTENIPPEdqGWFCKFCECK 292 588888854455******56**************999999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MRGGGKKLTH NDFGKHYSNK AGSVSKQSAP LKIENGTERL HMKRHKPKLK SHGNSNGSTV 60 LKKKVVKSVS NGMRNNSSGK NVNSTTDLHK TKSNKKQHSS SLEGEDILLD NSKEIGKQAN 120 GDDVKSKKLK KRRKRRRQRD NTELDEASRL KRRARYLLIK VKLELNLIEA YSGEGWKGQS 180 REKIKPENEL QRAKKQILKC KLGIRDAIHQ LDLLSSVGCI EGSAIAPDGS VYHEHIICAK 240 CKLREAFPDN DIILCDGTCN CAFHQKCLDP PLLTENIPPE DQGWFCKFCE CKMEILDAMN 300 AHLGTHFSAD SHWQEMFGKD ALVSEQISED EDWGPAKRKR REKESDAATT LMTLSESEKK 360 FPNVNTVEDQ EKLPHSGKTK RSFFRIPPNA VEKLRIAFAE NELPSKAVKD NLSQQLGIES 420 EKVNKWFKNA RYIALKARKT ERAKKILCGS PKFTKESRSK IGKDKTADPL ASKDISSTTA 480 VHSPRHLKKA SGKKNVQYIT YALKKKHHKR ALYNSNKADM EFGDDVSLKI LKAFAKKKKK 540 RVNLVGGGGV EEAEAELERL CKIKGKVEKL QKVLLGLPNH ISIIKTTTTT DDHSVVYVPV 600 AELREKR

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MRGGGKKLTH NDFGKHYSNK AGSVSKQSAP LKIENGTERL HMKRHKPKLK SHGNSNGSTV  60
LKKKVVKSVS NGMRNNSSGK NVNSTTDLHK TKSNKKQHSS SLEGEDILLD NSKEIGKQAN  120
GDDVKSKKLK KRRKRRRQRD NTELDEASRL KRRARYLLIK VKLELNLIEA YSGEGWKGQS  180
REKIKPENEL QRAKKQILKC KLGIRDAIHQ LDLLSSVGCI EGSAIAPDGS VYHEHIICAK  240
CKLREAFPDN DIILCDGTCN CAFHQKCLDP PLLTENIPPE DQGWFCKFCE CKMEILDAMN  300
AHLGTHFSAD SHWQEMFGKD ALVSEQISED EDWGPAKRKR REKESDAATT LMTLSESEKK  360
FPNVNTVEDQ EKLPHSGKTK RSFFRIPPNA VEKLRIAFAE NELPSKAVKD NLSQQLGIES  420
EKVNKWFKNA RYIALKARKT ERAKKILCGS PKFTKESRSK IGKDKTADPL ASKDISSTTA  480
VHSPRHLKKA SGKKNVQYIT YALKKKHHKR ALYNSNKADM EFGDDVSLKI LKAFAKKKKK  540
RVNLVGGGGV EEAEAELERL CKIKGKVEKL QKVLLGLPNH ISIIKTTTTT DDHSVVYVPV  600
AELREKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	KKLKKRRKR
2	130	134	KKRRK
3	130	136	KKRRKRR
4	131	137	KKRRKRR
5	132	162	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
6	133	137	RKRRR
7	133	163	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
8	134	164	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
9	338	343	RKRREK
10	536	566	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
11	537	567	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
12	538	568	RRKRRRQRDNTELDEASRLKRRARYLLIKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-93	HB-PHD family protein