PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028051624.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-PHD

Protein Properties

Length: 729aa MW: 81801.7 Da PI: 9.6107

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028051624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.9	9.5e-10	510	554	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L +F++n ps++ + L+++lg++ ++V WF+N R+ XP_028051624.1 510 PNAVEKLRIAFAENELPSKAVKDNLSQQLGIESEKVNKWFKNARY 554 67889999***********************************97 PP
2	PHD	32.4	2.1e-11	237	292	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l +e++p + w+C+ C++k XP_028051624.1 237 ICAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLLTENIPPEdqGWFCKFCECK 292 588898854455******56**************999999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MRGGGKKLTH NDFGKHYSNK AGSVSKQSAP LKIENGTERL HMKRHKPKLK SHGNSNGSTV 60 LKKKVVKSVS NGMRNNSSGK NVNSTTDLHK TKSNKKQHSS SLEGEDILLD NSKEIGKQAN 120 GDDVKSKKLK KRRKRRRQRD NTELDEASRL KRRARYLLIK VKLELNLIEA YSGEGWKGQS 180 REKIKPENEL QRAKKQILKC KLGIRDAIHQ LDLLSSVGCI EGSAIAPDGS VYHEHIICAK 240 CKLREAFPDN DIILCDGTCN CAFHQKCLDP PLLTENIPPE DQGWFCKFCE CKMEILDAMN 300 AHLGTHFSAD SHWQEIFKEE AALPDGGGAF LDPEQEWPSD DSEDDDYDPE KIENSCSYSR 360 AGSEADDLDD ASSSSSLWSL EEEVFSESGR PSKKHKDGQN ASFESSIGVD SDETTDCEVL 420 SGPRLRKAVD YKKLYDEMFG KDALVSEQIS EDEDWGPAKR KRREKESDAA TTLMTLSESE 480 KKFPNVNTVE DQEKLPHSGK TKRSFFRIPP NAVEKLRIAF AENELPSKAV KDNLSQQLGI 540 ESEKVNKWFK NARYIALKAR KTERAKKILC GSPKFTKESR SKIGKDKTAD PLASKDISST 600 TAVHSPRHLK KASGKKNVQY ITYALKKKHH KRALYNSNKA DMEFGDDVSL KILKAFAKKK 660 KKRVNLVGGG GVEEAEAELE RLCKIKGKVE KLQKVLLGLP NHISIIKTTT TTDDHSVVYV 720 PVAELREKR

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MRGGGKKLTH NDFGKHYSNK AGSVSKQSAP LKIENGTERL HMKRHKPKLK SHGNSNGSTV  60
LKKKVVKSVS NGMRNNSSGK NVNSTTDLHK TKSNKKQHSS SLEGEDILLD NSKEIGKQAN  120
GDDVKSKKLK KRRKRRRQRD NTELDEASRL KRRARYLLIK VKLELNLIEA YSGEGWKGQS  180
REKIKPENEL QRAKKQILKC KLGIRDAIHQ LDLLSSVGCI EGSAIAPDGS VYHEHIICAK  240
CKLREAFPDN DIILCDGTCN CAFHQKCLDP PLLTENIPPE DQGWFCKFCE CKMEILDAMN  300
AHLGTHFSAD SHWQEIFKEE AALPDGGGAF LDPEQEWPSD DSEDDDYDPE KIENSCSYSR  360
AGSEADDLDD ASSSSSLWSL EEEVFSESGR PSKKHKDGQN ASFESSIGVD SDETTDCEVL  420
SGPRLRKAVD YKKLYDEMFG KDALVSEQIS EDEDWGPAKR KRREKESDAA TTLMTLSESE  480
KKFPNVNTVE DQEKLPHSGK TKRSFFRIPP NAVEKLRIAF AENELPSKAV KDNLSQQLGI  540
ESEKVNKWFK NARYIALKAR KTERAKKILC GSPKFTKESR SKIGKDKTAD PLASKDISST  600
TAVHSPRHLK KASGKKNVQY ITYALKKKHH KRALYNSNKA DMEFGDDVSL KILKAFAKKK  660
KKRVNLVGGG GVEEAEAELE RLCKIKGKVE KLQKVLLGLP NHISIIKTTT TTDDHSVVYV  720
PVAELREKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	KKLKKRRKR
2	130	134	KKRRK
3	130	136	KKRRKRR
4	131	137	KKRRKRR
5	132	162	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
6	133	137	RKRRR
7	133	163	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
8	134	164	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
9	460	465	RKRREK
10	658	688	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
11	659	689	RRKRRRQRDNTELDEASRLKRRARYLLIKVK
12	660	690	RRKRRRQRDNTELDEASRLKRRARYLLIKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-96	HB-PHD family protein