PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc333044.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | ARF | ||||||||
Protein Properties | Length: 179aa MW: 20052.1 Da PI: 8.9243 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.5 | 6.7e-20 | 15 | 78 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +t+ ++d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + ++el+v+++r+ Cse_sc333044.1_g010.1 15 QTILVKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL--RAANGELCVGIRRA 78 4899**********************************************..3489999*****97 PP | |||||||
2 | Auxin_resp | 89 | 8.5e-30 | 108 | 177 | 2 | 70 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdld 70 ++ a +++FevvY+Prast+eF+vk++ v++a+++++++GmRfkm fetedss++++ +Gtv+gv+ d Cse_sc333044.1_g010.1 108 VNHALDAEAFEVVYYPRASTPEFCVKASTVKAAMRIQWCPGMRFKMPFETEDSSRISWfMGTVSGVQVED 177 677778899*********************************************************9866 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
TIFPRLDYAA DPPVQTILVK DVHGEIWKFR HIYRGTPRRH LLTTGWSNFV NHKKLVAGDS 60 IVFLRAANGE LCVGIRRAKR GIGGGFFDIP NAYNVGCKAS VESVIEAVNH ALDAEAFEVV 120 YYPRASTPEF CVKASTVKAA MRIQWCPGMR FKMPFETEDS SRISWFMGTV SGVQVEDQI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 6e-78 | ARF family protein |