PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc067263.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21743.6 Da PI: 8.3573 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139 | 1.7e-43 | 23 | 121 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC ++Cv+apyfp e+p+kf nvhk+FGasnv+kl++++ +++red++ssl+yeAear+rdPv+G+vg+i+ lq++++ Cse_sc067263.1_g010.1 23 PCAACKFLRRKCIPGCVFAPYFPPEDPQKFMNVHKIFGASNVTKLMNEVMPHQREDVVSSLAYEAEARIRDPVHGCVGIISYLQREVD 110 7*************************************************************************************** PP DUF260 89 qlkaelallke 99 +l+++l+++++ Cse_sc067263.1_g010.1 111 RLQKDLDATNA 121 ******99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence |
MDINVTKQVQ VNKMASSTSY NYPCAACKFL RRKCIPGCVF APYFPPEDPQ KFMNVHKIFG 60 ASNVTKLMNE VMPHQREDVV SSLAYEAEAR IRDPVHGCVG IISYLQREVD RLQKDLDATN 120 ADLLRYSSNG MAGLPCMTSI DQPVTRQSAV DPFATRRIGG GYYQPPASYY GNQMWNLQNH 180 HSNFHGNNMS GGGGN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 2e-68 | LBD family protein |