PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc048409.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 178aa MW: 20683.2 Da PI: 8.7139 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.7e-18 | 25 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++t+eq++ Le+ F+ n++++ +++ +LA++lg++ rq+ +W+qN+Ra++++ Cse_sc048409.1_g030.1 25 NKKRLTNEQVKLLETSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRN 79 67789************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 101.7 | 6.6e-33 | 25 | 116 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k+rl++eqvklLE+sF+ ++kL+++rK++la+eLg+ +rq+a+W+qn+RAR++++ lE+++++L++++++++++++rLe+eve+L+ Cse_sc048409.1_g030.1 25 NKKRLTNEQVKLLETSFNFNNKLDSTRKSQLAQELGVPARQIAIWYQNKRARWRNQSLETEHKMLQDRLERVSSDKNRLEREVERLQG 112 79*************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 el++ Cse_sc048409.1_g030.1 113 ELEK 116 9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MHILSLDLHP LNMDFSQPKK HPKSNKKRLT NEQVKLLETS FNFNNKLDST RKSQLAQELG 60 VPARQIAIWY QNKRARWRNQ SLETEHKMLQ DRLERVSSDK NRLEREVERL QGELEKAKDM 120 LVSSKTINYA SLPSFSSSCD EVASSSLLGD HGDFYVCFDD HQFDHKSNGH DFFARSTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-32 | HD-ZIP family protein |