PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc044314.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19883.5 Da PI: 9.5288 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.9 | 8.4e-44 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC ++Cv+apyfp e+p+kf nvhk+FGasnv+kl++++ +++red++ssl+yeAear+rdPv+G+vg+i+ lq+q++ Cse_sc044314.1_g010.1 10 PCAACKFLRRKCIPGCVFAPYFPPEDPQKFMNVHKIFGASNVTKLMNDVLPHQREDVVSSLAYEAEARIRDPVHGCVGIISYLQRQVD 97 7*************************************************************************************** PP DUF260 89 qlkaelallke 99 +l+++l+++++ Cse_sc044314.1_g010.1 98 RLQKDLDATNA 108 ******99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MASSTSYNYP CAACKFLRRK CIPGCVFAPY FPPEDPQKFM NVHKIFGASN VTKLMNDVLP 60 HQREDVVSSL AYEAEARIRD PVHGCVGIIS YLQRQVDRLQ KDLDATNADL LRYSSNGMTS 120 IQPVTRQRAA DHFATRRIGG GYYQPPPSYY GNRMWNLQNH SNFRGNNMTD GKQNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 9e-69 | LBD family protein |