PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc041448.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 490aa    MW: 55216.3 Da    PI: 4.4444
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc041448.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS143.62e-441354892373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL + A+a+s g+++la+ ++  +se  +  g +++R+ + + ++  ++ ++           +++    + + ++a+++f++++P
  Cse_sc041448.1_g010.1 135 QNLLKAWADAISLGQKQLADVIVRCISEKTNAIGAAIERISFNLFQGGDNQGNE---------YLTQE---AVRNFMQAFSAFYKIFP 210
                            5788899***************************************99999888.........23333...48899999********* PP

                   GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            + +f+h+taN+aIl+av  + e vHiiDfdi +G QWp  ++a+a +     sl iT v+++e  +    eet+++L ++A+++g+++
  Cse_sc041448.1_g010.1 211 YGRFAHFTANSAILQAVPVHvESVHIIDFDICEGSQWPVVIEAIARQ---RISLTITSVKQEE--HGFGFEETKRNLINYARTCGLNL 293
                            ******************999************************75...567********66..99********************* PP

                   GRAS 177 efnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl...sPkvvvvveqeadh...nsesFler 256
                            +      k+++++ ++e++ ++  gE l+ n+++ l ++ + + +++   +++L++ k +   +  ++ + + e       +++F   
  Cse_sc041448.1_g010.1 294 KVPE---KDVTQM-MQEMEGQRkgGEFLVFNCMVGLPHMGKTRKTTQ--VTNFLSIAKAVlaaNDGILAIGDGEGHErieKASDFSSF 375
                            9876...566666.4555555557***************95555554..59999999987333557999999996543556779**** PP

                   GRAS 257 flealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                            f  +l +y al++s+e ++p++  e+r  +E  ++++ i+     ++ e + r++t        ++ G+k  ++s +  ++a+ l+++
  Cse_sc041448.1_g010.1 376 FDAKLAHYKALYESIEWGFPSHLtEARLAMETLFVAPFISTNSWLKKWE-EGRENT-----VSQSMIGLKGPSMSIESLNEARELVKQ 457
                            *******************99877999******9999998766666666.444444.....445889********************* PP

                   GRAS 344 vk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373
                            ++   g rve ++ +++vl W++ pLv vS+W
  Cse_sc041448.1_g010.1 458 TEsPYGIRVEgDSGNEMVLEWNRTPLVKVSVW 489
                            **8899999955577899************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MLSEVLIQTP WPIQSYFQSN LDHYEREHHE FLASINSSPE YSLISSESYL PVLSDECVDY  60
PFLGNDQTQN FSPDEIDSQN IMVLDDVCKW LCDDDQVAKE IQSETSVKGE DIWSPCLSVE  120
ELNDVMEPEL QTGIQNLLKA WADAISLGQK QLADVIVRCI SEKTNAIGAA IERISFNLFQ  180
GGDNQGNEYL TQEAVRNFMQ AFSAFYKIFP YGRFAHFTAN SAILQAVPVH VESVHIIDFD  240
ICEGSQWPVV IEAIARQRIS LTITSVKQEE HGFGFEETKR NLINYARTCG LNLKVPEKDV  300
TQMMQEMEGQ RKGGEFLVFN CMVGLPHMGK TRKTTQVTNF LSIAKAVLAA NDGILAIGDG  360
EGHERIEKAS DFSSFFDAKL AHYKALYESI EWGFPSHLTE ARLAMETLFV APFISTNSWL  420
KKWEEGRENT VSQSMIGLKG PSMSIESLNE ARELVKQTES PYGIRVEGDS GNEMVLEWNR  480
TPLVKVSVWV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-19GRAS family protein