PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc040960.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 410aa MW: 47702.2 Da PI: 8.5769

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc040960.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28	7.1e-09	72	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +Y eYA ++ Fs+rks+sk++k g k g ++++ ++r+ + t ++Cka+++ k + ++ +++++++++HnH+ Cse_sc040960.1_g010.1 72 MYLEYALKARFSIRKSTSKRKK--G---------EKDGGNKTR------QKRNFNYTIMDCKACVRFKAIHgTSSFKLYEFVENHNHP 142 7889999999999999887772..2.........345555554......45589999************9************** PP FAR1 89 la 90 l Cse_sc040960.1_g010.1 143 LL 144 95 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MDSTTGNYDQ EDTDVNSNED VSTEYSDLDY SEIDDECIPT LKGHKYWIPE VPADENPSEG 60 NVFDTFDEAY DMYLEYALKA RFSIRKSTSK RKKGEKDGGN KTRQKRNFNY TIMDCKACVR 120 FKAIHGTSSF KLYEFVENHN HPLLDENNTD LLKARRKLDF SDKLFIHRAS LSNLGPTKAH 180 RLRVAFMGGY QKVRGKPSDW KNFRRSVNKY IGPRDAQMLV DKMNDRKKHV PNFSFEYHTV 240 DDVLSRMFWT DETMKCNYNT FGDVLAFDAT YRTNRYRMIF VPFTGIDHNK KCVTFGAALF 300 SDETIESYKW ILTAFKQVHV KEPILVVTDQ DLALRNAVEV VFPEAHQRLC MRHITQKLPG 360 KICGEVDSDF EFKKLFHKLI WHALIGKSTS KRKKCEIAHK YLLCSGAEKP

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MDSTTGNYDQ EDTDVNSNED VSTEYSDLDY SEIDDECIPT LKGHKYWIPE VPADENPSEG  60
NVFDTFDEAY DMYLEYALKA RFSIRKSTSK RKKGEKDGGN KTRQKRNFNY TIMDCKACVR  120
FKAIHGTSSF KLYEFVENHN HPLLDENNTD LLKARRKLDF SDKLFIHRAS LSNLGPTKAH  180
RLRVAFMGGY QKVRGKPSDW KNFRRSVNKY IGPRDAQMLV DKMNDRKKHV PNFSFEYHTV  240
DDVLSRMFWT DETMKCNYNT FGDVLAFDAT YRTNRYRMIF VPFTGIDHNK KCVTFGAALF  300
SDETIESYKW ILTAFKQVHV KEPILVVTDQ DLALRNAVEV VFPEAHQRLC MRHITQKLPG  360
KICGEVDSDF EFKKLFHKLI WHALIGKSTS KRKKCEIAHK YLLCSGAEKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-38	FAR1 family protein