PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc036635.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 211aa MW: 24671.4 Da PI: 4.7214 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.2 | 3.3e-19 | 30 | 81 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ft++q++ Le+ F++++++ +++ +LAk lgL+ rqV +WFqN+Ra++k Cse_sc036635.1_g030.1 30 RRFTNQQIKSLETIFQSESKLEPRKKLQLAKDLGLQPRQVAIWFQNKRARWK 81 69*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.6 | 1.6e-38 | 29 | 119 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +rr++++q+k+LE+ F++e+kLep++K +la++Lglqprqva+WFqn+RAR+k+kqlE+dy+ L+++yd+l ++ + L++e+++L+ + Cse_sc036635.1_g030.1 29 QRRFTNQQIKSLETIFQSESKLEPRKKLQLAKDLGLQPRQVAIWFQNKRARWKSKQLERDYNILRANYDSLLSKFDVLSRENQSLTLQ 116 79************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 l++ Cse_sc036635.1_g030.1 117 LQK 119 986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence |
MLDLGSDPDS DCFTTFFNTL SNNKDNKIQR RFTNQQIKSL ETIFQSESKL EPRKKLQLAK 60 DLGLQPRQVA IWFQNKRARW KSKQLERDYN ILRANYDSLL SKFDVLSREN QSLTLQLQKL 120 HEVIDKKEKN CSTRENSKDS TEEKISEKGL GNVSDADSNM KQEYPEHNNS MLVVDMLETA 180 NEDNWEDLES DQLLNEAAIG DTSNQWWDVW C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-46 | HD-ZIP family protein |