PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc035972.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 458aa MW: 52662.1 Da PI: 4.4501

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc035972.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.8	4.4e-11	126	195	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekk 70 W+++ + +L+e+ ++ +l+r++l++ +W ev++k++e ++e++ qC+ ++e l+++ykk+k+ +++ Cse_sc035972.1_g010.1 126 WSENATFVLLEVWGDRYMQLGRRSLRGEDWVEVAEKISEMcKMEINDGQCRTRFETLKQKYKKEKAKMEG 195 ***********************************775378********************98775 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MDYNSSIRSR RPIRNNNYTN NNYNDYDNDN DFEPPESPLA PPINNRFNYQ QHQHVNIVND 60 DSDNSVDDDD DQDDNNNNNN NEYQQQYYNV GETSTRRHQK KRRLENLVGG YGYAPRGNVS 120 NVMDDWSENA TFVLLEVWGD RYMQLGRRSL RGEDWVEVAE KISEMCKMEI NDGQCRTRFE 180 TLKQKYKKEK AKMEGSGMGM GHAYYGKLGF FKKMDMLLSP KRQHNGLPCG VDSGEYVFMN 240 TKVYLNQSNA LDEMRDSPGE SEVDEDDEEE DEDGLNEEDE EGVLDVLVEE DEDGLNEEDE 300 EGCFVILSRR LLFATHYHPV TKEFAAHPHV TLQHMACAFK SISSTSLSTS QQLVFLYRLT 360 IGACPESYGM QVALMAGIPQ KVESATKAAE VMKTKIGVSF RSSEQRSEFS TLHEEWLKSV 420 LAMSRVDDHK LVGGDEDDVF DELFCLWHEL KCSNKKLM

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MDYNSSIRSR RPIRNNNYTN NNYNDYDNDN DFEPPESPLA PPINNRFNYQ QHQHVNIVND  60
DSDNSVDDDD DQDDNNNNNN NEYQQQYYNV GETSTRRHQK KRRLENLVGG YGYAPRGNVS  120
NVMDDWSENA TFVLLEVWGD RYMQLGRRSL RGEDWVEVAE KISEMCKMEI NDGQCRTRFE  180
TLKQKYKKEK AKMEGSGMGM GHAYYGKLGF FKKMDMLLSP KRQHNGLPCG VDSGEYVFMN  240
TKVYLNQSNA LDEMRDSPGE SEVDEDDEEE DEDGLNEEDE EGVLDVLVEE DEDGLNEEDE  300
EGCFVILSRR LLFATHYHPV TKEFAAHPHV TLQHMACAFK SISSTSLSTS QQLVFLYRLT  360
IGACPESYGM QVALMAGIPQ KVESATKAAE VMKTKIGVSF RSSEQRSEFS TLHEEWLKSV  420
LAMSRVDDHK LVGGDEDDVF DELFCLWHEL KCSNKKLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-46	Trihelix family protein