PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc035538.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 865aa    MW: 96935.5 Da    PI: 6.319
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc035538.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-23151252199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  Cse_sc035538.1_g010.1 151 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 236
                            99*****************************8544444..48********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  Cse_sc035538.1_g010.1 237 FI--WNEKNQLLLGIRRA 252
                            **..8899999****997 PP
2Auxin_resp114.78.1e-38277360183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+t+s F+++YnPras+ eFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dld vrWpnS+Wrs+k
  Cse_sc035538.1_g010.1 277 AAHAAATNSCFTIFYNPRASPCEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDAVRWPNSHWRSVK 360
                            79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    
MAVSYWFAEL VRNKLRVLGN NNNNMKLSTS GLSQQVHEGE KKCLNSELWH ACAGPLVSLP  60
IVGSRVVYFP QGHSEQVAAT TNKEVDAHIP NYPTLPPQLI CQLHNVTMHA DVETDEVYAQ  120
MTLQPLTPQE QKDTFLPVEL GTPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL  180
DFSQQPPAQE LIARDLHDVE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN  240
EKNQLLLGIR RATRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSCFTIF YNPRASPCEF  300
VIPLTKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGIGDLDAVR WPNSHWRSVK  360
VGWDESTAGD RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP WYPGASSFQD GRDDAVNGMT  420
WMRGETGEQG LHSLNFQSVG MFPWMQQRVD PSFLQNNLNQ QYQAAMAAGL QNLGGSDALK  480
QQLMQFQQQQ QQQQQPPMQY PQHSVSGTSN PLFQQSQQQI QQLIPQQFMH GQTQIPQQVN  540
SQPEEQQQQQ QQVNSQQPPN SFPESYMIQH EQLQTRPQSS VPSHSFQKTE FMDPNAKFAS  600
NINPSAMQNM LGSLNSEGSS NLLSFSRTEH QPNQQQSWVS RFGQSQTNVS SAAPSILPVD  660
QETSSLDARN QGLYGGTNID SSGLLLPATV SNTGISSPDT DLTTMPSSAS GFQNSPYFGY  720
MQDSSSELLH STTQIDPPNP NRTFVKVYKS GSVGRSLDIT RFNNYPELKE ELGQMFNIEG  780
LLEDPQRSGW QLVFVDREND VLLLGDGPWE AFVNSVWYIK ILSPEDVQKL GKQELETFNQ  840
NSGERTGNDG RNVSGLPPSI GSLDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein