PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc035175.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 175aa    MW: 19836.4 Da    PI: 9.1456
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc035175.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.31.1e-4210108199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrrkC ++Cv+apyfp e+p+kf nvh +FGasnv+kl++++ +++red++ssl+yeAear+rdPv+G+vg+i+ lq+q++
  Cse_sc035175.1_g010.1  10 PCAACKFLRRKCIPGCVFAPYFPPEDPQKFMNVHNIFGASNVTKLMNDVLPHQREDVVSSLAYEAEARIRDPVHGCVGIISYLQRQVD 97 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallke 99 
                            +l+++l++ ++
  Cse_sc035175.1_g010.1  98 HLQKDLDASNA 108
                            *****998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MASSTSYNYP CAACKFLRRK CIPGCVFAPY FPPEDPQKFM NVHNIFGASN VTKLMNDVLP  60
HQREDVVSSL AYEAEARIRD PVHGCVGIIS YLQRQVDHLQ KDLDASNADL LRYSSNGMTS  120
IQPVTRQRAA DHFATRRIGG GYYQPPPSYY GNRMWNLQNH SNFRGNNMTD GKQNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.27e-67LBD family protein