PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc034211.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 494aa MW: 55170.5 Da PI: 8.9434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc034211.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	92	112	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Cse_sc034211.1_g010.1 92 CEICNKGFQRDQNLQLHRRGH 112 *******************88 PP
2	zf-C2H2	11.9	0.0007	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Cse_sc034211.1_g010.1 167 WKCDKCSKRYAVQSDWKAHSKIC 189 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MKGIFLDDNM SNLTSASNEA SLSSSGNRNE IGTMYPPPHM HQSFGSVPIT TSTNNQTQSN 60 KKKRNLPGNP DPEAEVVALS PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 KSKLEVVRKK VYVCPEPSCV HHEPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKRYAVQS 180 DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ETARSSSSSL NHLPLHLPIN 240 FPLKSEPQHL FQNPQLSFNI GSNSPHPNHQ LPSWLDHNQH HQQQQNSSPN SLHLPSPSSH 300 MSATALLQKA AQMGVTSSNP AISMPHQHQQ SILLNGSQQN LQQDHMCAPL LSSQHHHHQQ 360 QHLSNLSSSD NNHHVILQQN NAFANVTSSC MDQLLHHTTP MTSTNVGSTN IHDIFNGMLN 420 STKQAQASSE TVRKEGGGGG GGANDELTRD FLGLRGFPNP NDHQHFLNMA SLDHMNHQLN 480 SNPNQNQNQI PWQG

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MKGIFLDDNM SNLTSASNEA SLSSSGNRNE IGTMYPPPHM HQSFGSVPIT TSTNNQTQSN  60
KKKRNLPGNP DPEAEVVALS PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
KSKLEVVRKK VYVCPEPSCV HHEPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKRYAVQS  180
DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ETARSSSSSL NHLPLHLPIN  240
FPLKSEPQHL FQNPQLSFNI GSNSPHPNHQ LPSWLDHNQH HQQQQNSSPN SLHLPSPSSH  300
MSATALLQKA AQMGVTSSNP AISMPHQHQQ SILLNGSQQN LQQDHMCAPL LSSQHHHHQQ  360
QHLSNLSSSD NNHHVILQQN NAFANVTSSC MDQLLHHTTP MTSTNVGSTN IHDIFNGMLN  420
STKQAQASSE TVRKEGGGGG GGANDELTRD FLGLRGFPNP NDHQHFLNMA SLDHMNHQLN  480
SNPNQNQNQI PWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	130	KLKQKSKLEVVRKK
2	119	132	KLKQKSKLEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	C2H2 family protein