PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc030659.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 173aa MW: 18942.6 Da PI: 8.2229

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc030659.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.4	5.4e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C +C+vlr++C ++Cvl+p++ p+++++++ +v k+FG++ ++++++++p ++r+++++sl++eA r+ +Pv+Ga+g+++++ Cse_sc030659.1_g040.1 2 SCHGCRVLRKRCDQNCVLRPCLdyfesPEAKAHATLFVSKFFGRTDLINFITSVPAHKRKAVFQSLLFEAVGRTVNPVNGAIGLLSTG 89 6*******************99999999****************************************************** PP DUF260 84 qqqleqlkaelal 96 +++l+q+++ ++l Cse_sc030659.1_g040.1 90 NWHLCQAAVRTVL 102 ****9988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MSCHGCRVLR KRCDQNCVLR PCLDYFESPE AKAHATLFVS KFFGRTDLIN FITSVPAHKR 60 KAVFQSLLFE AVGRTVNPVN GAIGLLSTGN WHLCQAAVRT VLAGGTPTVL TKTSHVQERF 120 SQTPAACNFP APSNFIISSS NNGEEQSWDI SRVSSFPCSN DDGDEPKLLN LLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-52	LBD family protein