PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc029790.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 17216.4 Da PI: 8.4697 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.7e-42 | 12 | 110 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC ++Cv++pyfp e+p kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ Cse_sc029790.1_g040.1 12 PCAACKFLRRKCIRGCVFSPYFPPEDPTKFINVHKIFGASNVSKLLNEIAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVL 99 7*************************************************************************************** PP DUF260 89 qlkaelallke 99 +l++el+++++ Cse_sc029790.1_g040.1 100 RLQKELDATNA 110 ******99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MASSSHPSYS APCAACKFLR RKCIRGCVFS PYFPPEDPTK FINVHKIFGA SNVSKLLNEI 60 APHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQRQVLR LQKELDATNA DLIRFSSNQN 120 TLMTPQIPGS SLQNPNAFPT NYGTYSWDYN QGERG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 7e-67 | LBD family protein |