PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc027805.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 18267.5 Da PI: 7.7559 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.2 | 4.8e-32 | 28 | 128 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqp...kkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 +CaaC++++ +C++dC+lapyf ++q + +nvh lFG +n+ k+l+++++e+ r+dam+sl+ye +ar rdP+ G+++++ +lq Cse_sc027805.1_g010.1 28 ECAACRFHNTRCPPDCILAPYFSQAQDdiiIQVQNVHALFGFQNIRKMLTNIDDETrRDDAMTSLMYEVDARGRDPIGGCHRIVCALQ 115 5*********************8877545589********************888768****************************** PP DUF260 85 qqleqlkaelall 97 q+++++ el+ + Cse_sc027805.1_g010.1 116 GQYASARRELEFV 128 ********99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence |
MSTQKNHPNN PNHNNNHPSS RKCSTNHECA ACRFHNTRCP PDCILAPYFS QAQDDIIIQV 60 QNVHALFGFQ NIRKMLTNID DETRRDDAMT SLMYEVDARG RDPIGGCHRI VCALQGQYAS 120 ARRELEFVTR LNALCKGMYG SAKQKQDIVN DQGFDLDISV R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-23 | LBD family protein |