PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc027274.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 574aa MW: 65590.4 Da PI: 9.8337

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc027274.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.6e-22	85	190	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek 72 +f++eYA+e+GF+vr+ +k++++ng + f+Cs+eg + + k++ ++ +rr+ra++r+gCka++++++++ Cse_sc027274.1_g010.1 85 QFFKEYAREAGFEVRIGGQKNREKNGYPSVKYFYCSREGLKPSPKTDklqidksksdnieavtRVIKRRKRASQRCGCKAQIHLRRTE 172 6************************************999888888*********999999***************** PP FAR1 73 dgkwevtkleleHnHela 90 d+k++v+++ ++HnH+l+ Cse_sc027274.1_g010.1 173 DNKYYVHTFFEKHNHSLV 190 **************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MPLYGLPSLP LWFVVCSLCV FGSGSEPSTP QSTNIVQDNV DVDAQTAPQV GSYQPTPPGS 60 KLWIPEANKK PVEGTRFDTL DLPLQFFKEY AREAGFEVRI GGQKNREKNG YPSVKYFYCS 120 REGLKPSPKT DKLQIDKSKS DNIEAVTRVI KRRKRASQRC GCKAQIHLRR TEDNKYYVHT 180 FFEKHNHSLV HDDDYKYLCA ARKLTFPKQK LLHQLSNANI GPTRAWKMVV EKLLSRQEYC 240 TNFSVEYKQN KKDKTLVGLF WVDEQAKLNY DAFGDVVSFD ATFRSNRYNM VLVPFTSIDN 300 HNRCILFGAA LLASEAGWLL KRFKKIFGSA PNVVVTDQDP SMKIAIEKIF PESRHRLCIW 360 HIMQKLTGKE SDTYSTFVIR DTEADYRIKD SLVEAKYEVK YVPSECLVQC SCLRCVSKTK 420 DFSPSSNSAH VVDEALRHIY SDVDESINHL VGDIEKLHIY MDSQTTLMKK AKLEVPNPPK 480 MNTNEAYARA LGVTEPKELD ILPPTDINNK GHVIRTRHKA KSKIAMQLGD KPKRMCKSCG 540 KYVRHGSRNC PKKKERAKRP GRGSGLRRCH GYIR

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MPLYGLPSLP LWFVVCSLCV FGSGSEPSTP QSTNIVQDNV DVDAQTAPQV GSYQPTPPGS  60
KLWIPEANKK PVEGTRFDTL DLPLQFFKEY AREAGFEVRI GGQKNREKNG YPSVKYFYCS  120
REGLKPSPKT DKLQIDKSKS DNIEAVTRVI KRRKRASQRC GCKAQIHLRR TEDNKYYVHT  180
FFEKHNHSLV HDDDYKYLCA ARKLTFPKQK LLHQLSNANI GPTRAWKMVV EKLLSRQEYC  240
TNFSVEYKQN KKDKTLVGLF WVDEQAKLNY DAFGDVVSFD ATFRSNRYNM VLVPFTSIDN  300
HNRCILFGAA LLASEAGWLL KRFKKIFGSA PNVVVTDQDP SMKIAIEKIF PESRHRLCIW  360
HIMQKLTGKE SDTYSTFVIR DTEADYRIKD SLVEAKYEVK YVPSECLVQC SCLRCVSKTK  420
DFSPSSNSAH VVDEALRHIY SDVDESINHL VGDIEKLHIY MDSQTTLMKK AKLEVPNPPK  480
MNTNEAYARA LGVTEPKELD ILPPTDINNK GHVIRTRHKA KSKIAMQLGD KPKRMCKSCG  540
KYVRHGSRNC PKKKERAKRP GRGSGLRRCH GYIR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	153	RVIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-40	FAR1 family protein