PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc026742.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 18040.3 Da PI: 9.6741 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135 | 2.8e-42 | 39 | 138 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCaaC+++rrkCa+dC+lapyfp++++++f+n+hklFG+sn++k++++l++ ++++am++++y++++ra+dPv G++++i++lq+q+e Cse_sc026742.1_g010.1 39 ACAACRYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIRDLDPPQKDEAMRTIIYQSDVRAQDPVGGCYRIIRELQRQIE 126 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ++ael+ + ++ Cse_sc026742.1_g010.1 127 LSRAELEFVLHQ 138 ******988776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MTNNFNHNKN INHRHHNHHH LSSSVSTITT TRSNSTTQAC AACRYQRRKC APDCILAPYF 60 PHDRQRQFQN AHKLFGVSNI TKIIRDLDPP QKDEAMRTII YQSDVRAQDP VGGCYRIIRE 120 LQRQIELSRA ELEFVLHQLA VCRAHAMQNQ NQNQN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-56 | LBD family protein |