PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc026317.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 501aa MW: 57005.9 Da PI: 10.3835

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc026317.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.9	2.6e-13	12	59	37	86
trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 k++e g++rs+k+Ckek+en+ k++k++keg+ ++ + +t+++fdql+ Cse_sc026317.1_g030.1 12 KLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTSK--ADGKTYRFFDQLQ 59 7899***************************96..66678****98 PP
2	trihelix	105.9	2.9e-33	379	464	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi++r+ ++++++++ k+plWee+s++mr+ g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+a Cse_sc026317.1_g030.1 379 RWPKAEINALIKLRTTLDTKYQESGPKGPLWEEISSAMRKLGYNRNAKRCKEKWENINKYYKKVKESSKKR-PEDSKTCPYFHQLDA 464 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MIFNVCFDFI RKLAELGYHR SAKKCKEKFE NVYKYHKRTK EGRTSKADGK TYRFFDQLQA 60 LEGSPAHVMS QHQHQQQQQQ TPSTQHQQHP VVSKPVQVSP MPNTQVPSIV IPTNVTNATG 120 SHQNNVDPIS VAAPAVTMPA TMNINHVAGF PFSQLNLSVS TNSSSSSTSS DDDVAPERRR 180 NKKRKWKEFF GKLMKEVIDK QEELQSKFLD SLERRERDRM AREEAWRMQE MAKMKREHDL 240 LVQERSMVAA KDAAVISFLQ KITEQNPSTV IPQMPAMQLL QQQQQQNRPP QPPPPQPQPQ 300 PTPSIMQQSQ PQQQQQQQPQ PQVQKQQQPP QQATLPLAVP LHVPPIPVSV QATTPPPPAV 360 KNLDNGGGGE SMLQPSPSRW PKAEINALIK LRTTLDTKYQ ESGPKGPLWE EISSAMRKLG 420 YNRNAKRCKE KWENINKYYK KVKESSKKRP EDSKTCPYFH QLDAIYREKA GSSSVLPLHF 480 QNRIMVSSTP FSKSYNGFLV A

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MIFNVCFDFI RKLAELGYHR SAKKCKEKFE NVYKYHKRTK EGRTSKADGK TYRFFDQLQA  60
LEGSPAHVMS QHQHQQQQQQ TPSTQHQQHP VVSKPVQVSP MPNTQVPSIV IPTNVTNATG  120
SHQNNVDPIS VAAPAVTMPA TMNINHVAGF PFSQLNLSVS TNSSSSSTSS DDDVAPERRR  180
NKKRKWKEFF GKLMKEVIDK QEELQSKFLD SLERRERDRM AREEAWRMQE MAKMKREHDL  240
LVQERSMVAA KDAAVISFLQ KITEQNPSTV IPQMPAMQLL QQQQQQNRPP QPPPPQPQPQ  300
PTPSIMQQSQ PQQQQQQQPQ PQVQKQQQPP QQATLPLAVP LHVPPIPVSV QATTPPPPAV  360
KNLDNGGGGE SMLQPSPSRW PKAEINALIK LRTTLDTKYQ ESGPKGPLWE EISSAMRKLG  420
YNRNAKRCKE KWENINKYYK KVKESSKKRP EDSKTCPYFH QLDAIYREKA GSSSVLPLHF  480
QNRIMVSSTP FSKSYNGFLV A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	185	RRNKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-44	Trihelix family protein