PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc025276.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 535aa MW: 60396.3 Da PI: 5.861

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc025276.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1.1e-13	31	77	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eEd +l++ v++ G + W+ I r+ g+ R++++c+ rw + Cse_sc025276.1_g010.1 31 KGLWTPEEDAILIKHVEENGERFWNDIRRRHGLMRCGNSCRRRWMNN 77 678*****************************************997 PP
2	Myb_DNA-binding	49.1	1.3e-15	84	126	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + ++T eE+ +++++++q+G++ W++ a +++ gRt++++k++w+ Cse_sc025276.1_g010.1 84 KENFTLEEENKILRLHAQHGNR-WSLLALHFP-GRTDNEIKNYWN 126 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MVQENGVISK SGRRKGSGGG RKARVINGLN KGLWTPEEDA ILIKHVEENG ERFWNDIRRR 60 HGLMRCGNSC RRRWMNNLRS SLKKENFTLE EENKILRLHA QHGNRWSLLA LHFPGRTDNE 120 IKNYWNVRHK RLTRTGLPIY PPEIQKEIDL RNIHLQQEEQ TENQLQISPS SSSQNQTNHD 180 SSSITPLPSF ELAEKYNHKS KATSSSSSHQ AHTTISFSSP SSLDENPVFS LINPTKYPLL 240 YASLYHPSKM LLGDSNGKAI MAPPPPSIII PSYNSPYITP IDQNPVTLFE KTPFPKMDDA 300 FFSENFELEI PSIHSSFQTI ASKSDHIIVP PNGNDNQSMD PEFFLQRNNG TLGDILRQSR 360 ALFSSKENHQ FKDDQCEGRI VHDDDTIAIM HNTFNNVNVQ TNFAPIGVDK TPMESTYSLQ 420 YSTDMGVDSQ ARVFEDFNMM ENDLLGWSEL QQTAPIEPAN VLNGTMAAAT NNLHNAITPA 480 EIDHDWGTDV ALSPIETIPA NTDHDWAQDV IGSPIAVTPL EQDHDWATSF FPSFI

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MVQENGVISK SGRRKGSGGG RKARVINGLN KGLWTPEEDA ILIKHVEENG ERFWNDIRRR  60
HGLMRCGNSC RRRWMNNLRS SLKKENFTLE EENKILRLHA QHGNRWSLLA LHFPGRTDNE  120
IKNYWNVRHK RLTRTGLPIY PPEIQKEIDL RNIHLQQEEQ TENQLQISPS SSSQNQTNHD  180
SSSITPLPSF ELAEKYNHKS KATSSSSSHQ AHTTISFSSP SSLDENPVFS LINPTKYPLL  240
YASLYHPSKM LLGDSNGKAI MAPPPPSIII PSYNSPYITP IDQNPVTLFE KTPFPKMDDA  300
FFSENFELEI PSIHSSFQTI ASKSDHIIVP PNGNDNQSMD PEFFLQRNNG TLGDILRQSR  360
ALFSSKENHQ FKDDQCEGRI VHDDDTIAIM HNTFNNVNVQ TNFAPIGVDK TPMESTYSLQ  420
YSTDMGVDSQ ARVFEDFNMM ENDLLGWSEL QQTAPIEPAN VLNGTMAAAT NNLHNAITPA  480
EIDHDWGTDV ALSPIETIPA NTDHDWAQDV IGSPIAVTPL EQDHDWATSF FPSFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55020.1	7e-43	MYB family protein