PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc024478.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 401aa MW: 45980 Da PI: 6.3215 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 26 | 1.9e-08 | 139 | 179 | 22 | 59 |
EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Y+rCt++ gC+++k+v++++++p ++tY+g H+++ Cse_sc024478.1_g040.1 139 KNYFRCTHKdekGCRATKQVQKTNDEPAKYKTTYNGLHTCT 179 68******99999**************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 401 aa Download sequence |
MESSYQPECL PSNRIKSIQE LTQGQQLTNK LREMLGQPEK VEPDCKSVDS VAVQILGMFD 60 NTLSILNSYT FNGYPDILTE ATRINTRSLD FQKSQNCGEN VKFVRSEKTK RGCYKRRGNS 120 STFMKITSSL IDDGYIWRKN YFRCTHKDEK GCRATKQVQK TNDEPAKYKT TYNGLHTCTK 180 SHEVVYGISD SLDCSDNSVI LDFKTNTLIE NKQVGIFYHS SKQIPKENFS SLGFSQEQYF 240 LSDNYTASDL LTQLLDVPLE PESTILSGLD HEDMIFSDVF SSSGTLGYEI DNMLESYDFV 300 KTAWTPENPG KRFIACPIYD KKRKCGVYEF FDEDLPSDYY RQLLLDLHAR ARRGSQTVEM 360 QEHIGVLTME KARLVQELTV TKSKLQLYDR IFVILSVIIG H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-26 | WRKY family protein |