PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc024405.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 18664.1 Da PI: 5.7422 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.1 | 3.2e-29 | 2 | 99 | 1 | 93 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C+l + + +++q++++ +v+k+FG++ +l++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++ Cse_sc024405.1_g020.1 2 SCNGCRVLRKGCNENCILKQSIsgietAQAQASATVFVAKFFGRAGLLSFLSSVPEHQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNW 91 6*********************9998777889********************************************************** PP DUF260 86 qleqlkae 93 +++q+++ Cse_sc024405.1_g020.1 92 HVCQSAVA 99 ****9865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MSCNGCRVLR KGCNENCILK QSISGIETAQ AQASATVFVA KFFGRAGLLS FLSSVPEHQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQSAVAT ILRGGSIQAM PEFFSVEATQ 120 VMTGNNNASE IRFTGSEGGE NSDPWMENVS ETTTSESGTR SGSTCTEAKL LTLFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 9e-64 | LBD family protein |