PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc023931.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 622aa    MW: 69279.5 Da    PI: 5.1589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc023931.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.23.6e-972626212374
                   GRAS   2 velLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            +++L+++A++++ g++  laq++Larl+++ sp g+p++R+a+yf+eAL+  +++    +++ ++p +++  + + ++ a+k fsevs
  Cse_sc023931.1_g010.1 262 IDQLYKAADMIQCGNNPiLAQSILARLNHQLSPIGKPFERAAFYFKEALQLLIHS----IVNNMNPISSP-FSLILKIGAYKSFSEVS 344
                            689*********9887769***********************************9....77777777665.579999*********** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                            P+++f+++t+Nqa+lea++g +rvHi+Dfdi++G QW++++q+La R+  +  psl+iT+++sp+ +++ el+ t+e+L +fA+e++v
  Cse_sc023931.1_g010.1 345 PFVQFTNFTCNQALLEALDGFDRVHIVDFDIGYGDQWASFMQELALRSnnNRIPSLKITAFASPT-NDHLELSLTRENLVNFANEMNV 431
                            ***********************************************9666689*********77.6899****************** PP

                   GRAS 175 pfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             f+f+++  + l+++ +++L  rv+ +Ea+aVnl ++ ++ +      + + + vL++vk+lsPk+vv  ++ +++++ +F +++++a
  Cse_sc023931.1_g010.1 432 GFDFEIVNIDVLASV-TWSLpfRVSDNEAIAVNLPISSFSSY------QIPFPLVLRFVKNLSPKIVVSKDRGCERTDLPFPNHIVHA 512
                            ******988888888.6776447888**********998887......445588********************************** PP

                   GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                            ++ ++ l++sl++    + ++ +k+Er+l+++++++++  + +      e+ ++Wr+++ ++GF+p+++s++a++qa +++++++++g
  Cse_sc023931.1_g010.1 513 IQSCTNLLESLDTV-NMNLDTLQKIERFLVQPSVEKIINGRFSF----LEKTQHWRSQFLSCGFTPLTFSNFAESQALCVIKRTPVRG 595
                            ***********887.567799*****************876666....999************************************* PP

                   GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                            ++ve ++ slvl+W++r+Lvs+SaWr
  Cse_sc023931.1_g010.1 596 FHVERRQSSLVLCWQHRELVSASAWR 621
                            *************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    
MLKPFKFQSK IVAGEKAETV VPCANKVVHF QDLVSFEEGP ISVLDNVDYS PTSTSTGGGG  60
GKSVKWESPE NQEMVTGDEK SGEMEDWESV FEYPLMGDVE DPLMGLQKLV HGGGNGGCTV  120
DDGSEVTAAF GGLDQAFLGY DNNNPDGHFG NFQKFVNDKI VCFQPAAPPL VVAAPPAGGF  180
EENHCQYDVK PQLNKNGNFF VPLENETLMQ PQAKRYNSGS IGYNYQTVPK TPFLDAPQNI  240
KKMIGGNEFG SNGNDHYYQG IIDQLYKAAD MIQCGNNPIL AQSILARLNH QLSPIGKPFE  300
RAAFYFKEAL QLLIHSIVNN MNPISSPFSL ILKIGAYKSF SEVSPFVQFT NFTCNQALLE  360
ALDGFDRVHI VDFDIGYGDQ WASFMQELAL RSNNNRIPSL KITAFASPTN DHLELSLTRE  420
NLVNFANEMN VGFDFEIVNI DVLASVTWSL PFRVSDNEAI AVNLPISSFS SYQIPFPLVL  480
RFVKNLSPKI VVSKDRGCER TDLPFPNHIV HAIQSCTNLL ESLDTVNMNL DTLQKIERFL  540
VQPSVEKIIN GRFSFLEKTQ HWRSQFLSCG FTPLTFSNFA ESQALCVIKR TPVRGFHVER  600
RQSSLVLCWQ HRELVSASAW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-142GRAS family protein