PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc023757.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 618aa MW: 70579.4 Da PI: 4.9347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc023757.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	2e-12	347	390	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++Er+RR+++N+++ +Lr+l+Pk +Kl+ a+iL+ A+eY+ +L Cse_sc023757.1_g020.1 347 LMAERKRRKKLNDRLYTLRSLVPKI-----TKLDRASILKDAIEYVMEL 390 589*******************7.....7************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MEVLQEMMDR LRSIVGPENW DYCVLWKPCK DQRVIEWIDC CCSGSNAARH GIGNDDQQQQ 60 LVFQCKDVAF HHPTTDACNL LSLLPSSMPF DSGLYGQTMI SNQPRWLNFS NSSNSGYSEE 120 NLGTKILIPV PIGLVELFVS KQISEDQSII DFVTTMFNMS LEQPMLNPNN NIDSSFSVNM 180 DSLDDGESKD YIAQVLDDQK DQNNHFQPPI SPATMLENLN LSPNNMSDNH MHPMNFLQQF 240 NYGENRNTKN MFMEGTSEPM MNHDDPFDPN SEDNVGFDHE IDMALQGHMM SENMGKAHLM 300 EPLENAPKKQ GNDMNRSDSV SDCSDQNDED DDPKCRRRNG KPQSKNLMAE RKRRKKLNDR 360 LYTLRSLVPK ITKLDRASIL KDAIEYVMEL KRQVEDLQNE LEENSDDEGT ANNQSTIVEQ 420 EIIHGNGSNS KRRYNHGPGQ FMNGPQLEAY SGVGNIEVSK QNQDVEGASE KGQQMEPQVE 480 VASLDGNEFF VKVFSEHKPG GFVRLMEAFN ALGLEVTNVN VTSFRCLVLN VFKVERKDSE 540 MVQADHVRES LLEITRNPYK GWPENSMKAQ ENGHGMVDHH HQNQHHHNHS NHHNHNQHLQ 600 NQQPKPQYHY NSIFQVLN

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MEVLQEMMDR LRSIVGPENW DYCVLWKPCK DQRVIEWIDC CCSGSNAARH GIGNDDQQQQ  60
LVFQCKDVAF HHPTTDACNL LSLLPSSMPF DSGLYGQTMI SNQPRWLNFS NSSNSGYSEE  120
NLGTKILIPV PIGLVELFVS KQISEDQSII DFVTTMFNMS LEQPMLNPNN NIDSSFSVNM  180
DSLDDGESKD YIAQVLDDQK DQNNHFQPPI SPATMLENLN LSPNNMSDNH MHPMNFLQQF  240
NYGENRNTKN MFMEGTSEPM MNHDDPFDPN SEDNVGFDHE IDMALQGHMM SENMGKAHLM  300
EPLENAPKKQ GNDMNRSDSV SDCSDQNDED DDPKCRRRNG KPQSKNLMAE RKRRKKLNDR  360
LYTLRSLVPK ITKLDRASIL KDAIEYVMEL KRQVEDLQNE LEENSDDEGT ANNQSTIVEQ  420
EIIHGNGSNS KRRYNHGPGQ FMNGPQLEAY SGVGNIEVSK QNQDVEGASE KGQQMEPQVE  480
VASLDGNEFF VKVFSEHKPG GFVRLMEAFN ALGLEVTNVN VTSFRCLVLN VFKVERKDSE  540
MVQADHVRES LLEITRNPYK GWPENSMKAQ ENGHGMVDHH HQNQHHHNHS NHHNHNQHLQ  600
NQQPKPQYHY NSIFQVLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	336	356	RRRNGKPQSKNLMAERKRRKK
2	350	357	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-121	bHLH family protein