PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc023465.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 586aa MW: 68289.2 Da PI: 7.1068

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc023465.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.7	1.3e-11	62	163	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkek.d 73 ++Y eY+++ F++rks+ k++ +++eit+r C++ gkr+++ + ++k++r+++++ ++C ak+ ++ + + Cse_sc023465.1_g030.1 62 DMYLEYSQKGRFNIRKSNVKRN-NKREITHRSILCNRAGKRRSKVEVntlkegeeeeegdnKKKRKRKTVSKACNCPAKISLRAIRgT 148 58*************99998.7777***********9988899******988888889999*********9999 PP FAR1 74 gkwevtkleleHnHe 88 + ++v++++++ H+ Cse_sc023465.1_g030.1 149 AAYKVIDFVENGHHQ 163 ******9987776 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MHQMQVVASQ MRDFDESDID IYEADPEFVP TPKGTPYWAP DIPEDEKPKW GVMFDTFDLA 60 YDMYLEYSQK GRFNIRKSNV KRNNKREITH RSILCNRAGK RRSKVEVNTL KEGEEEEEGD 120 NKKKRKRKTV SKACNCPAKI SLRAIRGTAA YKVIDFVENG HHQKCVTFGA ALLCDETYES 180 YCWMLEAFLK VHIKPPLALT DQDAALRKAV VKIFPQSHHR LCMWHITQKL PGKVLGDLEV 240 DSEFRKDFHK LIWNVYITPQ IFEQRWNDLI NRYNLHENKW LSDMYEIRDR WIPGYFSEVP 300 MCGLMKTTSR SESSNAFFQI FSHKGNTFVQ FMLCFESAME KQRYTQRVLD NKENGSNPSL 360 LTDLAIEAHA HELYTQSIFR EVQHEIYKGL YSCSQFNSQL EGSVVTCNIR QMDKRSNKVI 420 DATRHRYGPC LEETDRITSD VHATIDDCVS LLRSDTDKLS QFLVKVQEWK KQLEEEMPTP 480 TVDKDAMYAD LLGVTVPKRL HIKNPKKSSN KGSKRLKRAD EKGKAVKKQR TSRKIPFKPR 540 TCSYYKGKGH NIRGCPELES SSSDDEDDDD QDQEDDEERT DEDDEE

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MHQMQVVASQ MRDFDESDID IYEADPEFVP TPKGTPYWAP DIPEDEKPKW GVMFDTFDLA  60
YDMYLEYSQK GRFNIRKSNV KRNNKREITH RSILCNRAGK RRSKVEVNTL KEGEEEEEGD  120
NKKKRKRKTV SKACNCPAKI SLRAIRGTAA YKVIDFVENG HHQKCVTFGA ALLCDETYES  180
YCWMLEAFLK VHIKPPLALT DQDAALRKAV VKIFPQSHHR LCMWHITQKL PGKVLGDLEV  240
DSEFRKDFHK LIWNVYITPQ IFEQRWNDLI NRYNLHENKW LSDMYEIRDR WIPGYFSEVP  300
MCGLMKTTSR SESSNAFFQI FSHKGNTFVQ FMLCFESAME KQRYTQRVLD NKENGSNPSL  360
LTDLAIEAHA HELYTQSIFR EVQHEIYKGL YSCSQFNSQL EGSVVTCNIR QMDKRSNKVI  420
DATRHRYGPC LEETDRITSD VHATIDDCVS LLRSDTDKLS QFLVKVQEWK KQLEEEMPTP  480
TVDKDAMYAD LLGVTVPKRL HIKNPKKSSN KGSKRLKRAD EKGKAVKKQR TSRKIPFKPR  540
TCSYYKGKGH NIRGCPELES SSSDDEDDDD QDQEDDEERT DEDDEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	86	VKRNNKR
2	122	128	KKKRKRK
3	123	128	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-34	FAR1 family protein