PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc023151.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 539aa MW: 62062.5 Da PI: 9.4201

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc023151.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.9	3.9e-14	147	240	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 Y +YA+++GF vrks +k+ r+g ++++ +vC++eg ++ + + ++k++r+++ + tgCka+++ ++ + +++++ +++ Cse_sc023151.1_g020.1 147 YMKYASKAGFVVRKSCQKRL-RSGIVKQKYLVCNREGCPKGIHVDtldlenSDKQKRSSNLHITGCKARVMFELIPgSTNYKLIVFDS 233 99**********998887.8898*********99988888999888899999999***********9******* PP FAR1 84 eHnHela 90 Hn +l Cse_sc023151.1_g020.1 234 IHNRKLE 240 *9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MDSIPNSSVS SDRSSSITES DRSSSDRSSF ITENVVVSIT ESATEDIVVS DDVSAKYTEE 60 NVAYEHGDES TAIKKLVFVI SFLLDQCFYF VLFISKLNAL KTPESFSTHS NFDTPGGTVY 120 YIPKVPVDIL LAKGNVYNAV DECISAYMKY ASKAGFVVRK SCQKRLRSGI VKQKYLVCNR 180 EGCPKGIHVD TLDLENSDKQ KRSSNLHITG CKARVMFELI PGSTNYKLIV FDSIHNRKLE 240 RKEYKHLSKT ERYKMMFVPF TAIDNHRKCV TVAAGLLKNE TTNSYIWLLK AFIKYFVKAP 300 SIVVTDQDGA MRKAIEQEFA GSKHILCMWH ITQKLPGKIC SKIYDHTDFK RKFNQIVWNM 360 YIGPGEFEYQ WGKLLDEFNL HNHKWLTKMF RIRSCWIPAF FVDSPLCGLM RTTSRSQSEN 420 SFFSHFTNSS STLMNFMNCF ETTMEKQGHI QERLDHKSID SIPTLRTYLK IERHASKVYT 480 RPLFELVQAE IFAGTWFCQI DTKSLVEGSE VSVIKEKKFV DELMEKKKAK KKEKFKKKR

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MDSIPNSSVS SDRSSSITES DRSSSDRSSF ITENVVVSIT ESATEDIVVS DDVSAKYTEE  60
NVAYEHGDES TAIKKLVFVI SFLLDQCFYF VLFISKLNAL KTPESFSTHS NFDTPGGTVY  120
YIPKVPVDIL LAKGNVYNAV DECISAYMKY ASKAGFVVRK SCQKRLRSGI VKQKYLVCNR  180
EGCPKGIHVD TLDLENSDKQ KRSSNLHITG CKARVMFELI PGSTNYKLIV FDSIHNRKLE  240
RKEYKHLSKT ERYKMMFVPF TAIDNHRKCV TVAAGLLKNE TTNSYIWLLK AFIKYFVKAP  300
SIVVTDQDGA MRKAIEQEFA GSKHILCMWH ITQKLPGKIC SKIYDHTDFK RKFNQIVWNM  360
YIGPGEFEYQ WGKLLDEFNL HNHKWLTKMF RIRSCWIPAF FVDSPLCGLM RTTSRSQSEN  420
SFFSHFTNSS STLMNFMNCF ETTMEKQGHI QERLDHKSID SIPTLRTYLK IERHASKVYT  480
RPLFELVQAE IFAGTWFCQI DTKSLVEGSE VSVIKEKKFV DELMEKKKAK KKEKFKKKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	526	539	KKKAKKKEKFKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-35	FAR1 family protein