PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc022399.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18466.3 Da PI: 8.4863 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.6 | 1e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+ks rqvtfskRr+g++KKA LSvLCd+++avi+fs gklye Cse_sc022399.1_g010.1 9 KRIEDKSSRQVTFSKRRTGLMKKARHLSVLCDVDIAVIVFSALGKLYES 57 79*********************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence |
MGRKKLEMKR IEDKSSRQVT FSKRRTGLMK KARHLSVLCD VDIAVIVFSA LGKLYESCSG 60 SSSNSVEHML SRYERSITEE GERTNNGAGG QLEVLSQCTK FRTCKELLQT VDRLVEENNS 120 EGLSVTDMTE LELELDAALV QTRLRKVIVR CYLFNSVSQA VIVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 5e-32 | MIKC_MADS family protein |