PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc021712.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

ARF

Protein Properties

Length: 654aa MW: 72790.4 Da PI: 5.9378

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc021712.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	2e-23	116	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ d++g +W++k+i+r++++r++lt+GW+ Fv ++L +gD++v Cse_sc021712.1_g020.1 116 FCKVLTASDTSTHGGFSVLRKHANEClpaldmtQ--ATPTQDLVALDLHGTEWRFKHIFRGQPRRHLLTTGWSTFVTNKRLVAGDSFV 201 99**************************9543..445568****************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F +++++el+ +v+r+ Cse_sc021712.1_g020.1 202 FL--RDENGELRAGVRRQ 217 ..56899999999986 PP
2	Auxin_resp	102.8	4.3e-34	242	320	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+st++ F v+Y+Pr+ s+F++ ++k+ +a+++ +svGmRfkm+fe+eds+err+sGt+vgv+d++ +W +SkWrsL Cse_sc021712.1_g020.1 242 ASHAVSTQTRFAVYYKPRT--SQFIIGLNKYIEAVNNAFSVGMRFKMRFEGEDSPERRFSGTIVGVEDISA-QWVESKWRSL 320 789*************6..9******************************************665.*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MDNQGGLEDP LYKELWKACA GPLVEVPKHG ERVYYFPQGH MEQLEASTNE ELNERIPLFN 60 LKSKILCRVV HTQLMAEHDS DEVYAQITLL PEADQTDPTS PDACVAEPPR PTVHSFCKVL 120 TASDTSTHGG FSVLRKHANE CLPALDMTQA TPTQDLVALD LHGTEWRFKH IFRGQPRRHL 180 LTTGWSTFVT NKRLVAGDSF VFLRDENGEL RAGVRRQARQ QINMPSSVIS SQSMHLGVLA 240 TASHAVSTQT RFAVYYKPRT SQFIIGLNKY IEAVNNAFSV GMRFKMRFEG EDSPERRFSG 300 TIVGVEDISA QWVESKWRSL RVQWDEPASI VRPERVSPWE IETFVAPIPT ALAPPVAALK 360 TKRPRPPMEI PNHEPTGSPV SAVWNSSHDS AEGPRGDSGC LLRTQMETGW LSSSPVKASR 420 NETEDRLGLS PWSVQSAFSP RESSLKPTND SLESPVEKKQ SVNAFSSCRL FGFDLMVPSK 480 ADVTPGKAPM TVTPSDVLYY SSIEGQLPST FSAGVSDLKS NLFKGCKEQG NVLVSPKEVQ 540 SKSTRSRTKV QMKGMAVGRA VDLTVLGGYD ELIDELEDMF EIKGQLRPRK EWDIIFTDDE 600 GDMMLVGDDP WPEFCNMVKR IMICSTQDVK KMKAGSKFPS SNDIETSSLE ASED

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MDNQGGLEDP LYKELWKACA GPLVEVPKHG ERVYYFPQGH MEQLEASTNE ELNERIPLFN  60
LKSKILCRVV HTQLMAEHDS DEVYAQITLL PEADQTDPTS PDACVAEPPR PTVHSFCKVL  120
TASDTSTHGG FSVLRKHANE CLPALDMTQA TPTQDLVALD LHGTEWRFKH IFRGQPRRHL  180
LTTGWSTFVT NKRLVAGDSF VFLRDENGEL RAGVRRQARQ QINMPSSVIS SQSMHLGVLA  240
TASHAVSTQT RFAVYYKPRT SQFIIGLNKY IEAVNNAFSV GMRFKMRFEG EDSPERRFSG  300
TIVGVEDISA QWVESKWRSL RVQWDEPASI VRPERVSPWE IETFVAPIPT ALAPPVAALK  360
TKRPRPPMEI PNHEPTGSPV SAVWNSSHDS AEGPRGDSGC LLRTQMETGW LSSSPVKASR  420
NETEDRLGLS PWSVQSAFSP RESSLKPTND SLESPVEKKQ SVNAFSSCRL FGFDLMVPSK  480
ADVTPGKAPM TVTPSDVLYY SSIEGQLPST FSAGVSDLKS NLFKGCKEQG NVLVSPKEVQ  540
SKSTRSRTKV QMKGMAVGRA VDLTVLGGYD ELIDELEDMF EIKGQLRPRK EWDIIFTDDE  600
GDMMLVGDDP WPEFCNMVKR IMICSTQDVK KMKAGSKFPS SNDIETSSLE ASED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	366	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein