PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc021066.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family E2F/DP
Protein Properties Length: 399aa    MW: 44742.8 Da    PI: 8.5143
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc021066.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.41.1e-222287171
                E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                           rk+ksL+ll+++fl+l+++   ++v l+e+a +L    v  +rRRiYDi+NVLe+++++ kk+kn + wkg
  Cse_sc021066.1_g020.1 22 RKQKSLGLLCSNFLSLYNRDGIETVGLDEAAARL---GV--ERRRIYDIVNVLESVGVLVKKAKNTYYWKG 87
                           79*****************999************...**..****************************98 PP
2E2F_TDP68.11.1e-21153264171
                E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....................................dvknkrRRiYDilN 51 
                            rkeksL+llt++flkl+ ++++++++l+++ak L+ +                                      v  k+RR+YDi+N
  Cse_sc021066.1_g020.1 153 RKEKSLGLLTKNFLKLFLCTDSDMLSLDDAAKILLGDahnpaltrstskypnhsfeykdpnnnysvanfnfeymAV-AKVRRLYDIAN 239
                            79**********************************************************************9866.799******** PP

                E2F_TDP  52 VLealnliek.....kekneirwkg 71 
                            VL+++n iek     ++k+++rw g
  Cse_sc021066.1_g020.1 240 VLSSMNFIEKthhpeTRKPAFRWVG 264
                            ***********99999*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    
MALQTPSPSV PAPGLGSTAY CRKQKSLGLL CSNFLSLYNR DGIETVGLDE AAARLGVERR  60
RIYDIVNVLE SVGVLVKKAK NTYYWKGLGA IHIALAQLKE EGFKNNDELI DAKPIKALDD  120
DDERFSNHSA SLQKKVEYDA IQKVDGLLKP ENRKEKSLGL LTKNFLKLFL CTDSDMLSLD  180
DAAKILLGDA HNPALTRSTS KYPNHSFEYK DPNNNYSVAN FNFEYMAVAK VRRLYDIANV  240
LSSMNFIEKT HHPETRKPAF RWVGMKGQTL SQTGTSSAIV NQDSKKRAFG TELTNICFKR  300
SKLVSENDMT EHQDVKPLHL QGARCNSDQG SGLTAPVSLL KYCDGESNKL KKTQDWESLA  360
AAYRPQYQNQ ALRDLFVHYV DAWKSWYSEV AEMDPIGAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-102E2F/DP family protein