PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc020528.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 267aa MW: 29511.4 Da PI: 7.8108

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc020528.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.6	8.6e-33	66	166	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrr+C+++C++apyf +q ++ fa+vhk+FGasnv + l +lp + re a+ ++ yeA+ar+ +Pv+G+v++i +l q + Cse_sc020528.1_g020.1 66 PCGACKFLRRRCVDGCIFAPYFSPDQgAAVFAAVHKVFGASNVARQLLQLPVNCRELAVLTISYEAQARLANPVHGCVETIIALYQLV 153 7*******************8888699******************************************************* PP DUF260 88 eqlkaelallkee 100 ++l+ el +++++ Cse_sc020528.1_g020.1 154 ASLQMELLAVQTQ 166 *****999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
LITKLVRPLP FRRIYNHIPK QVFLQTHICT MAEPNNESGS SRRGRKRAYG SIDLAPTDSG 60 SNSNSPCGAC KFLRRRCVDG CIFAPYFSPD QGAAVFAAVH KVFGASNVAR QLLQLPVNCR 120 ELAVLTISYE AQARLANPVH GCVETIIALY QLVASLQMEL LAVQTQLLNS RPTAANTLHG 180 SLQQPEPVQH FELQPIYSIG SPASTNNTMN MYPSDSSLPN VADYQNNVHL QPSFHPFQLS 240 RPQSQNGDKD EENQEFVAFL DQMLQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	5e-54	LBD family protein