PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc019820.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24975.7 Da PI: 6.633 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.5 | 1.1e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+apyf++eq +++fa++h++FGasnv+kll++lp + r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ Cse_sc019820.1_g010.1 7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHRVFGASNVSKLLAHLPVSGRCEAAITIAYEAQARLQDPIYGCVSHIFALQQQV 94 7*************************89************************************************************ PP DUF260 88 eqlkaelallkee 100 +l+++la+lke+ Cse_sc019820.1_g010.1 95 VSLQSQLASLKEQ 107 ********99987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence |
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HRVFGASNVS KLLAHLPVSG 60 RCEAAITIAY EAQARLQDPI YGCVSHIFAL QQQVVSLQSQ LASLKEQAAQ IVYSGSSCSN 120 YPTNDHRHNG RLPSNTPPQD IRSWFQQSDN SCLNMPQFDQ NSSASNINEI MNVNSTGHHY 180 ENSFLKEEDA SFSSFQEGSS YSIDYLDMQI SHTEDLHSVA FGYVQH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-56 | LBD family protein |