PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc019438.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 187aa MW: 20851.3 Da PI: 5.1442 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.3 | 4.4e-37 | 7 | 104 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+ pyf+ +q + +fa+vhk+FGasnv+kll +lp ++r++a+ s+ yeA r++dP+yG+v+ i++l+qq+ Cse_sc019438.1_g020.1 7 SCGACKFLRRKCTNECVFTPYFCYSQgADHFAAVHKVFGASNVSKLLMKLPLQNRSEAAISISYEALSRMHDPIYGCVAQIFALEQQV 94 6***********************9989************************************************************ PP DUF260 88 eqlkaelall 97 ++l++e+++l Cse_sc019438.1_g020.1 95 ASLQEEIDQL 104 ******9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence |
MTGTRFSCGA CKFLRRKCTN ECVFTPYFCY SQGADHFAAV HKVFGASNVS KLLMKLPLQN 60 RSEAAISISY EALSRMHDPI YGCVAQIFAL EQQVASLQEE IDQLGTFMAY ASFGQSNYAT 120 LQDTNNANTG LPFSFEFNDT SINDHLNQPT STLFDALQAS SPFEEHISHS YSFLDHPMTE 180 NDCNIHA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-52 | LBD family protein |