 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cse_sc018780.1_g020.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
| Family | Trihelix | ||||||||
| Protein Properties | Length: 341aa MW: 39317.7 Da PI: 10.2824 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 75.9 | 6.6e-24 | 236 | 318 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k+ev+aLi+ar + +++ + +k+ W++v++ +++ g++r+pk+Ckekw+n+nk+y+++ e +s+ c yf++le
Cse_sc018780.1_g020.1 236 RWPKSEVQALITARAALSQKFDGKGSKGSIWDDVAAELSSMGYNRTPKKCKEKWDNINKYYRRTVEKGTA---SKSQVCTYFRELE 318
8**************************************************************9988776...46778*****997 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 341 aa Download sequence |
MEMFTGDHGL QNDVVRYPDT HLAPFTSDHH KITIIPPQPP QKLRPIRSNV RTVNEPQPMT 60 WQPDVGFYNN SESGFGSPDP KDSNLGLLSK ACQNQAALRS SPDESSKSQE EAINEPVNKK 120 RKRKRKSRKR LKSLIKRMMD TVMEKQERMH KQLIEILEKK ENESIMREEA WKKQEIERAK 180 MNEQARSQEI SRSLALISFI QNTLGQEVQI PKPHNALNLL KKGENKKEEK LKFDARWPKS 240 EVQALITARA ALSQKFDGKG SKGSIWDDVA AELSSMGYNR TPKKCKEKWD NINKYYRRTV 300 EKGTASKSQV CTYFRELEML NQTKLSSANS HDENQNTKSL H |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 119 | 124 | KKRKRK |
| 2 | 119 | 125 | KKRKRKR |
| 3 | 120 | 126 | KKRKRKR |
| 4 | 120 | 132 | KRKRKRKSRKRLK |
| 5 | 121 | 126 | RKRKRK |
| 6 | 121 | 129 | RKRKRKSRK |
| 7 | 122 | 134 | KRKRKRKSRKRLK |
| 8 | 124 | 136 | KRKRKRKSRKRLK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G47660.1 | 2e-42 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|