PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc018144.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

TCP

Protein Properties

Length: 413aa MW: 45424.5 Da PI: 6.5579

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc018144.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.3	3.9e-36	56	184	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ss 67 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + Cse_sc018144.1_g020.1 56 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAQLpawkpsngsrneistsnlnfeqD- 142 79**************************************************************65544222222222222222210. PP TCP 68 ssaseceaesssssasnsssg........................................k 89 + + Cse_sc018144.1_g020.1 143 --------------------PdqgigiqeypgdengnesflppsldqdsiadtiksffpmgA 184 ....................123344555555555445555555555444444443333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MPETYQYNNQ QQQQQNQQLQ HQQQQQQQGS SRLALRTSNT GGEIVQVQGG HIVRSTGRKD 60 RHSKVCTAKG PRDRRVRLSA HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK TAIDELAQLP 120 AWKPSNGSRN EISTSNLNFE QDPDQGIGIQ EYPGDENGNE SFLPPSLDQD SIADTIKSFF 180 PMGASSNGAN NTSSADMHQF NQSQDLRLSL QSFQDPIMHN HHGHSHNSGS GNGNGNSSGT 240 NNNMFFDGSG WCEDNNPTHQ PHHAHQTGSG GFQRMVTWGN GGGGDGISAG FGSATQAPQM 300 SFLQPLFGQA TNNQLFTQRG PLQSSNAPSF RAWIDPPPVF TGVAIDQQPT LAFHHSSSMS 360 GFASGLGGFS GFRIPTRIQG EDEEHDGERL KQYVKFEARE DEKRFDGCII QVL

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MPETYQYNNQ QQQQQNQQLQ HQQQQQQQGS SRLALRTSNT GGEIVQVQGG HIVRSTGRKD  60
RHSKVCTAKG PRDRRVRLSA HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK TAIDELAQLP  120
AWKPSNGSRN EISTSNLNFE QDPDQGIGIQ EYPGDENGNE SFLPPSLDQD SIADTIKSFF  180
PMGASSNGAN NTSSADMHQF NQSQDLRLSL QSFQDPIMHN HHGHSHNSGS GNGNGNSSGT  240
NNNMFFDGSG WCEDNNPTHQ PHHAHQTGSG GFQRMVTWGN GGGGDGISAG FGSATQAPQM  300
SFLQPLFGQA TNNQLFTQRG PLQSSNAPSF RAWIDPPPVF TGVAIDQQPT LAFHHSSSMS  360
GFASGLGGFS GFRIPTRIQG EDEEHDGERL KQYVKFEARE DEKRFDGCII QVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	9e-76	TCP family protein