PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc018140.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 21914 Da PI: 6.5208 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.3 | 9.7e-19 | 33 | 81 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie + +vtfskR+ g++KKA+EL++L++a++a+ + s+ +++y + Cse_sc018140.1_g020.1 33 KKIEKSNTHKVTFSKRLSGLFKKASELCILTGAQIAIFVKSPADRMYVF 81 6899999***************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence |
MVSSSIDSMV STSIDTSPTI KKKSTGRKKI EIKKIEKSNT HKVTFSKRLS GLFKKASELC 60 ILTGAQIAIF VKSPADRMYV FGHPHANVLI EKYLQEKNND NVSLPNDFNQ RYEEFLREFE 120 AENTRNEMIG SNDHALCYDE PIDAMGLGEL ENYLCKLQKD RYDVEFVIFV YYDRSPFMWG 180 IVGKLVGESD F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-19 | M-type_MADS family protein |