PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc018060.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 610aa MW: 69271.2 Da PI: 6.6144

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc018060.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	25.3	2.9e-08	422	462	4	44
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 ++s d+++++ +++k+AAk+Lgv+l++LKr+ ++G++ W Cse_sc018060.1_g010.1 422 KLSRADIEQHYGKTMKKAAKDLGVSLSTLKRKHNKLGMSGW 462 78999*****************************9999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MANGFNDDTA SVNGDNNQFD QIVQNMNSSN GLNGDTAREP DTVTDGSSHR RRREKPHRMW 60 ADDAGTRMMI YDKIKSAFSK LNHHGLIAQF WEPVTIGGKH LLSTSGQPFA VSYLGSDFEK 120 YRRHCVEHVY DIDVNSKFRG TPASAFLNRF PEIALMHGGV YHEVDPFLRN AFQECTLHSS 180 VLIPIFCPSQ TSPSSDCIGV IECSTWSPSP INLCNEMNMK IKVEDTQTQT TRRLTLKLTG 240 YNSVDEDSIV SNWRSKEYYD ACDMVPLKKG EELVEKTLQY YQPRFCENIS QLGTDKLMAW 300 VSTDDVACSG FTICMSIDTG DFSCAFEFIW HHNPNYVLLL EALLLTLKRC LPRFNFASGA 360 EFGDQLHVID VDNSTESETR FFKIFKEKRL SPIPEAIDKG KKAMVVNYNA HSKEKHDTTE 420 IKLSRADIEQ HYGKTMKKAA KDLGVSLSTL KRKHNKLGMS GWQGPDLPQR KAYKSNKNQS 480 KASHTHEKDN GVIQDPSPVK RNENTVIKAE YADDIIKLHL HISEETFVTV ENEIGNKFKL 540 KHGTFKIKYL DEDEEWILMT SDQDLSDCIQ NSRNTINGLK LARDQIQEAL KIECQSHQIA 600 LVQVWIASVD

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MANGFNDDTA SVNGDNNQFD QIVQNMNSSN GLNGDTAREP DTVTDGSSHR RRREKPHRMW  60
ADDAGTRMMI YDKIKSAFSK LNHHGLIAQF WEPVTIGGKH LLSTSGQPFA VSYLGSDFEK  120
YRRHCVEHVY DIDVNSKFRG TPASAFLNRF PEIALMHGGV YHEVDPFLRN AFQECTLHSS  180
VLIPIFCPSQ TSPSSDCIGV IECSTWSPSP INLCNEMNMK IKVEDTQTQT TRRLTLKLTG  240
YNSVDEDSIV SNWRSKEYYD ACDMVPLKKG EELVEKTLQY YQPRFCENIS QLGTDKLMAW  300
VSTDDVACSG FTICMSIDTG DFSCAFEFIW HHNPNYVLLL EALLLTLKRC LPRFNFASGA  360
EFGDQLHVID VDNSTESETR FFKIFKEKRL SPIPEAIDKG KKAMVVNYNA HSKEKHDTTE  420
IKLSRADIEQ HYGKTMKKAA KDLGVSLSTL KRKHNKLGMS GWQGPDLPQR KAYKSNKNQS  480
KASHTHEKDN GVIQDPSPVK RNENTVIKAE YADDIIKLHL HISEETFVTV ENEIGNKFKL  540
KHGTFKIKYL DEDEEWILMT SDQDLSDCIQ NSRNTINGLK LARDQIQEAL KIECQSHQIA  600
LVQVWIASVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	55	RRRREK
2	346	350	TLKRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-12	Nin-like family protein