PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc017333.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 347aa MW: 39028.1 Da PI: 8.3292

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc017333.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	210	264	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Cse_sc017333.1_g030.1 210 RKKLRLTKEQSAFLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 264 788899***********************************************98 PP
2	HD-ZIP_I/II	127.5	5.7e-41	210	300	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr Cse_sc017333.1_g030.1 210 RKKLRLTKEQSAFLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR 297 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 +lk Cse_sc017333.1_g030.1 298 -ALK 300 .555 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MELALSLGDT PKPFSLLDHH TNISQSQQQQ KMKDLGFCMG LGNKTNIQDL HFNNNMSSSK 60 DKTSDIDDDT CKKLGESKSS SSSSDPSPPP LQLDLLPFTP VLRSPPHSTG LSFPWLSKNV 120 IVEPGSLAKP IKVPDVKVKP LTILSDQETC EDSSPNNSNS QTSSFQMDFA SILKNGRKRD 180 LELANTSLEL VEISNCSRGM SDEDENGLTR KKLRLTKEQS AFLEDSFKEH STLNPKQKQA 240 LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLQ KELQELRALK 300 TTQPFYMQMP ATTLTMCPSC ERVATTTTQT ATASPRTQQP ANSSHRH

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MELALSLGDT PKPFSLLDHH TNISQSQQQQ KMKDLGFCMG LGNKTNIQDL HFNNNMSSSK  60
DKTSDIDDDT CKKLGESKSS SSSSDPSPPP LQLDLLPFTP VLRSPPHSTG LSFPWLSKNV  120
IVEPGSLAKP IKVPDVKVKP LTILSDQETC EDSSPNNSNS QTSSFQMDFA SILKNGRKRD  180
LELANTSLEL VEISNCSRGM SDEDENGLTR KKLRLTKEQS AFLEDSFKEH STLNPKQKQA  240
LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLQ KELQELRALK  300
TTQPFYMQMP ATTLTMCPSC ERVATTTTQT ATASPRTQQP ANSSHRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	215	TRKKLRL
2	259	267	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-77	HD-ZIP family protein