PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc016690.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 613aa MW: 70878.4 Da PI: 9.2353

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc016690.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2.1e-23	74	179	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek 72 +fY+eYA+e+GF+vr+ +k++++ng + f+Cs+eg + + k++ ++ +rr+ra++r+gCka++++++++ Cse_sc016690.1_g010.1 74 QFYKEYAREAGFEVRIGGQKNREKNGYPSVKYFYCSREGLKPPPKTDklqtdkskpdnievvsRVIKRRKRASKRCGCKAQIRLRRTE 161 6*************************************99999889*********999999***************** PP FAR1 73 dgkwevtkleleHnHela 90 ++k++v+++ ++HnH+l+ Cse_sc016690.1_g010.1 162 ENKYYVHTFYEKHNHSLV 179 **************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MSTTSLNDSV QLVGEPSTPQ STNIFQDNVD VDAQTAPQVG SYQPTPPGSK FWIPEAKKKP 60 VEGTRFDTLD LDLQFYKEYA REAGFEVRIG GQKNREKNGY PSVKYFYCSR EGLKPPPKTD 120 KLQTDKSKPD NIEVVSRVIK RRKRASKRCG CKAQIRLRRT EENKYYVHTF YEKHNHSLVH 180 DEDYKYLRAA RKLTFPKKQL LHQLSNANIG PTRAWKVLIQ MYGGFENIGF TDVECINYRW 240 GLNEFIGERD TQMVVEKLLS RQEYCTNFSV EYKQNKKDKT LIGLFWVDEQ AKLNYDAFGD 300 VVSFDATFRS NRSAQLYESD TYSTFVIRDT EADYRIKDSF VEAKYEVFHF PKHYMQTRWS 360 KHAMSHRCVS KTKDFSPSSN SARVVDEALR HIYSDVDESI SHLVGDIEKL HIYMDNQTTL 420 MKKSKLEVPN PPKMNTNEAY ATALGVTEPK ELNILPPTDI NNKGHVIRTR HKAKSEIAMQ 480 LCDKPKRMCK SCGKYVRHDS RNCPKKKKGL KDQDVEQDFD DAMDIYDSDS PLVGIHISMS 540 ITFKIEFVKA FEDENIQLTK HKANTANVTD LAGKPMRMCR YCGRYAYHDA RNCPFRKNGV 600 GNFVLHTKGM ESY

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MSTTSLNDSV QLVGEPSTPQ STNIFQDNVD VDAQTAPQVG SYQPTPPGSK FWIPEAKKKP  60
VEGTRFDTLD LDLQFYKEYA REAGFEVRIG GQKNREKNGY PSVKYFYCSR EGLKPPPKTD  120
KLQTDKSKPD NIEVVSRVIK RRKRASKRCG CKAQIRLRRT EENKYYVHTF YEKHNHSLVH  180
DEDYKYLRAA RKLTFPKKQL LHQLSNANIG PTRAWKVLIQ MYGGFENIGF TDVECINYRW  240
GLNEFIGERD TQMVVEKLLS RQEYCTNFSV EYKQNKKDKT LIGLFWVDEQ AKLNYDAFGD  300
VVSFDATFRS NRSAQLYESD TYSTFVIRDT EADYRIKDSF VEAKYEVFHF PKHYMQTRWS  360
KHAMSHRCVS KTKDFSPSSN SARVVDEALR HIYSDVDESI SHLVGDIEKL HIYMDNQTTL  420
MKKSKLEVPN PPKMNTNEAY ATALGVTEPK ELNILPPTDI NNKGHVIRTR HKAKSEIAMQ  480
LCDKPKRMCK SCGKYVRHDS RNCPKKKKGL KDQDVEQDFD DAMDIYDSDS PLVGIHISMS  540
ITFKIEFVKA FEDENIQLTK HKANTANVTD LAGKPMRMCR YCGRYAYHDA RNCPFRKNGV  600
GNFVLHTKGM ESY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	142	RVIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-34	FAR1 family protein