PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc016315.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 582aa    MW: 65853.9 Da    PI: 5.2662
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc016315.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS57.72.4e-18294377187
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                            l++lL  cA+ vs++d++ ++ lL+r++e+asp+gd mqR+a+yf  +L+ar+a+s++e+ykal  ++ts    +++l+a++lf e+
  Cse_sc016315.1_g030.1 294 LRTLLSLCAQSVSTNDQRGVTDLLKRIREHASPTGDGMQRMAHYFSAGLEARMAGSGTEIYKALLRKPTS---AVDVLKAYHLFLET 377
                            5789999*********************************************************999999...999*******9987 PP
2GRAS187.59.1e-58376579170374
                   GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                            e++gv+f+f++ +a+++e+++le+L+++++E+l+Vn++++  +llde+v ++s+r++vL+l+++++P++++    + +++++ F++rf
  Cse_sc016315.1_g030.1 376 ETFGVKFKFKA-IAQKWESIRLEDLELDSEETLVVNCAYRFRNLLDETVIVDSPRNKVLELIRKMNPQIFIQGIVNGSYSAPFFVTRF 462
                            789********.7*************************************************************************** PP

                   GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                             eal +ys++fd+lea++ re+eeri vE+el gre++nv+aceg er+er et+++W+ r ++aGF ++p++ ++ k ak   +  +
  Cse_sc016315.1_g030.1 463 REALFFYSSVFDMLEATVNRETEERILVEKELWGREAMNVIACEGGERIERPETYKQWQVRNRRAGFCQIPFDPEILKMAKIRANSGY 550
                            *************************************************************************************999 PP

                   GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + ++++e+ ++l++gWk+r L+++SaWr
  Cse_sc016315.1_g030.1 551 HKDFMIDEDGHWLLQGWKGRILYAISAWR 579
                            888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
LIMDARLKAD YGLLNLNTMK CDEYNELASI LSDETFLKAV SLNESFIDWN LMIRPMRLPD  60
SVPSSSSMPV YGLKDEVDVH EDSDFSDLVL KYINQMLMEE NIEDKNCMFQ ESAALQAAEK  120
SFYDVLMVNE RPSDSTNPAA EPIGGSRLSC DVSESSSLPL YSTLQPSYSS LCSSSFVDGY  180
VDSPVSILSF PDRFHDNGSR VFPNGDGVLD IGSRGKKNLH SIDLADDSRS LKQSAVYTEP  240
TVRSKIFDEL LLCGGAKQHP SQCEYLKKEV IEVQPKGSKG RGKKQGGNKE VVDLRTLLSL  300
CAQSVSTNDQ RGVTDLLKRI REHASPTGDG MQRMAHYFSA GLEARMAGSG TEIYKALLRK  360
PTSAVDVLKA YHLFLETFGV KFKFKAIAQK WESIRLEDLE LDSEETLVVN CAYRFRNLLD  420
ETVIVDSPRN KVLELIRKMN PQIFIQGIVN GSYSAPFFVT RFREALFFYS SVFDMLEATV  480
NRETEERILV EKELWGREAM NVIACEGGER IERPETYKQW QVRNRRAGFC QIPFDPEILK  540
MAKIRANSGY HKDFMIDEDG HWLLQGWKGR ILYAISAWRP AY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-82GRAS family protein