PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc015404.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 299aa    MW: 35072.7 Da    PI: 6.6109
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc015404.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.24.9e-377106199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqql 87 
                            aCa+C + rrkC++dC+l pyfp+++p++f+n+h lFG++n+l +l++l+++e +++am+ ++yeA++ra+dPv G+++++l+l++q+
  Cse_sc015404.1_g040.1   7 ACAVCNFRRRKCPQDCILEPYFPQDHPQQFQNAHNLFGVKNMLTTLQNLDDQEkKDEAMRNMIYEANVRAKDPVGGCYRIVLQLKKQV 94 
                            7************************************************766659********************************* PP

                 DUF260  88 eqlkaelallke 99 
                            ++++ ela++ke
  Cse_sc015404.1_g040.1  95 REAQRELAYVKE 106
                            ********9986 PP
2DUF260114.56.9e-361502502100
                 DUF260   2 CaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            CaaC+++r++C++dC lapyfp +q  p +++nvhklF+ +nv+k+l+++++++r++am++++yeA++ra+dPv G++++i +l +q+
  Cse_sc015404.1_g040.1 150 CAACRYKRQRCPPDCSLAPYFPYDQnnPDQTQNVHKLFSFNNVSKILTKIDQTRRQEAMRCMIYEANVRAKDPVGGCYRIICELDRQV 237
                            **********************9875579*********************************************************** PP

                 DUF260  88 eqlkaelallkee 100
                            +++++ela ++++
  Cse_sc015404.1_g040.1 238 REARNELAIVNQR 250
                            ********99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MRHRGTACAV CNFRRRKCPQ DCILEPYFPQ DHPQQFQNAH NLFGVKNMLT TLQNLDDQEK  60
KDEAMRNMIY EANVRAKDPV GGCYRIVLQL KKQVREAQRE LAYVKELLVE FKQAYGVQNQ  120
NEIINDHDEF DFEYLDNQSS LRKDPIKPVC AACRYKRQRC PPDCSLAPYF PYDQNNPDQT  180
QNVHKLFSFN NVSKILTKID QTRRQEAMRC MIYEANVRAK DPVGGCYRII CELDRQVREA  240
RNELAIVNQR LAFHKPAESG VQNQNEIIND EEFSMKDLDD LRAAFYLDDI LDHDDQIGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.18e-29LBD family protein