PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc015404.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | LBD | ||||||||
Protein Properties | Length: 143aa MW: 16400.6 Da PI: 9.0231 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.5 | 2.1e-38 | 24 | 123 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaC++ rrkC +dC++apyfp +q+++f+n++klFG+s ++ ++ ++ ++e+r+dam+s+ yeA+arardPv G+++++l+l+qql Cse_sc015404.1_g010.1 24 ACAACRHIRRKCGPDCIFAPYFPLSQKEQFKNARKLFGVSFITTTMGNTnDREQRDDAMASIKYEADARARDPVGGCTRIVLELEQQL 111 7*******************************************9999856777********************************** PP DUF260 88 eqlkaelallke 99 ++++ el+ +k+ Cse_sc015404.1_g010.1 112 REAEDELKFVKQ 123 *******99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence |
MTTQNNHPNT PNQPSTIRKR TKPACAACRH IRRKCGPDCI FAPYFPLSQK EQFKNARKLF 60 GVSFITTTMG NTNDREQRDD AMASIKYEAD ARARDPVGGC TRIVLELEQQ LREAEDELKF 120 VKQLLAFYKS VGTFEEDQKQ DIK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-31 | LBD family protein |